Hi guys
I'm getting an annoying error message that you perhaps can help me with?
When I go:
bammds MA840_L1_S2_trim15_PMDS_filter3.bam /k/genotypes/HGDP_hg19_one_allele.txt
I get this:
Error unlinking file tmp/EFD6SGwO2i using unlink0 at /usr/local/bin/bammds_parallel line 5150.
bammds: Error: ASD-file (tmp/MA840_L1_S2_trim15_PMDS_filter3,HGDP_hg19_one_allele.asd) too short. Not plotting
The bam file is somewhat atypical as it is trimmed to just 15 bp and has been run through Pontus programme, retaining sequences with C to T damage. Not sure if any of that can explain the error?
Here is the file:
eos/data/meallentoft/Skhul/mapped_15bp$ bammds MA840_L1_S2_trim15_PMDS_filter3.bam
thanks!
Morten