Re: [Bammds-users] bammds

[OSullivan Niall]

I can't, the data is far too confidential to be circulated now. 

The genome was downloaded from here 
http://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/

Best

Niall

-----Original Message-----
From: address@hidden [mailto:address@hidden On Behalf Of Ole Tange
Sent: giovedì 25 settembre 2014 16.48
To: OSullivan Niall
Cc: address@hidden
Subject: Re: bammds

On Thu, Sep 25, 2014 at 4:39 PM, OSullivan Niall <address@hidden> wrote:
> Hi
> I think it may be the reference file that was used for the bwa mapping. I 
> used HG19 and I downloaded it directly from UCSC. You used a different one, 
> but from where?

Can you give me access to all the data you used, so I can reproduce your 
problem? And a link to the HG19 file you used.


/Ole