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From: | Rob Sargent |
Subject: | Re: GNU Parallel Bug Reports trouble with space after filename substitution |
Date: | Tue, 06 Jan 2015 11:43:51 -0700 |
User-agent: | Mozilla/5.0 (X11; Linux x86_64; rv:31.0) Gecko/20100101 Thunderbird/31.3.0 |
On 01/06/2015 11:21 AM, Ole Tange
wrote:
parallel --verbose --joblog ba.ll --jobs 6 java -cp . BillAuer {1} 9 {2} " This behaves the same way. The verbose is there just to see what parallel is up to. parallel --verbose --jobs 6 echo BillAuer {1} 9 {2} ">" {//}/peakdector.{2} :::: pvalFilelist1 ::: 15 20 25 30 35 40 The file arguement is a file of filename: /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pvaland since each file has the same basename I wanted to get dirname and write to <dirname>/peakdector.{2} but the result is (thanks to --verbose) echo BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 15 > /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.15Thanks, rjs PS: I remade the file-of-files into a table of the the necessary permutations (inputfile outputfile percentile) and just ran from there. |
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