[debbugs-tracker] bug#26979: closed ([PATCH] gnu: Add gemma.)

[GNU bug Tracking System]

Your message dated Thu, 18 May 2017 14:01:58 +0200
with message-id <address@hidden>
and subject line Re: bug#26979: [PATCH] gnu: Add gemma.
has caused the debbugs.gnu.org bug report #26979,
regarding [PATCH] gnu: Add gemma.
to be marked as done.

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-- 
26979: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=26979
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add gemma.
>
>
>
>
> Date: 
>
> Thu, 18 May 2017 05:59:47 +0000
>
>
>
>
> From: Pjotr Prins <address@hidden>
>
> * gnu/packages/bioinformatics.scm (gemma): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 40 ++++++++++++++++++++++++++++++++++++++++
>  1 file changed, 40 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 9f5d8141d..d35b51d85 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -2696,6 +2696,46 @@ comment or quality sections.")
>        (supported-systems '("x86_64-linux"))
>        (license license:expat))))
>  
> +(define-public gemma
> +  (package
> +    (name "gemma")
> +    (version "0.96")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (string-append 
> "https://github.com/xiangzhou/GEMMA/archive/v";
> +                                  version ".tar.gz"))
> +              (file-name (string-append name "-" version ".tar.gz"))
> +              (sha256
> +               (base32
> +                "055ynn16gd12pf78n4vr2a9jlwsbwzajpdnf2y2yilg1krfff222"))))
> +    (inputs
> +     `(("gsl" ,gsl)
> +       ("lapack" ,lapack)
> +       ("zlib" ,zlib)))
> +    (build-system gnu-build-system)
> +    (arguments
> +     `(#:make-flags '("FORCE_DYNAMIC=1") ; use shared libs
> +       #:phases
> +       (modify-phases %standard-phases
> +         (delete 'configure)
> +         (add-before 'build 'bin-mkdir
> +                     (lambda _
> +                       (mkdir-p "bin")))
> +         (replace 'install
> +                  (lambda* (#:key outputs #:allow-other-keys)
> +                    (let ((out (assoc-ref outputs "out")))
> +                      (install-file "bin/gemma"
> +                                    (string-append
> +                                     out "/bin"))))))
> +       #:tests? #f)) ; no tests included yet
> +    (home-page "https://github.com/xiangzhou/GEMMA";)
> +    (synopsis "Tool for genome-wide efficient mixed model association")
> +    (description
> +     "Genome-wide Efficient Mixed Model Association (GEMMA) provides a
> +standard linear mixed model resolver with application in genome-wide
> +association studies (GWAS).")
> +    (license license:gpl3)))
> +
>  (define-public grit
>    (package
>      (name "grit")
> -- 
> 2.11.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: bug#26979: [PATCH] gnu: Add gemma.
>
>
>
>
> Date: 
>
> Thu, 18 May 2017 14:01:58 +0200
>
>
>
>
> User-agent: 
>
> Gnus/5.13 (Gnus v5.13) Emacs/25.2 (gnu/linux)
>
>
>
>
> Pjotr Prins <address@hidden> skribis:
>
> > From: Pjotr Prins <address@hidden>
> >
> > * gnu/packages/bioinformatics.scm (gemma): New variable.
>
> Applied, thanks!
>
>
> --- End Message ---