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[debbugs-tracker] bug#30152: closed ([PATCH 0/4] Add Sailfish and Salmon


From: GNU bug Tracking System
Subject: [debbugs-tracker] bug#30152: closed ([PATCH 0/4] Add Sailfish and Salmon)
Date: Sun, 21 Jan 2018 13:22:02 +0000

Your message dated Sun, 21 Jan 2018 14:20:41 +0100
with message-id <address@hidden>
and subject line Re: [PATCH 4/4] gnu: Add salmon.
has caused the debbugs.gnu.org bug report #30152,
regarding [PATCH 0/4] Add Sailfish and Salmon
to be marked as done.

(If you believe you have received this mail in error, please contact
address@hidden)


-- 
30152: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=30152
GNU Bug Tracking System
Contact address@hidden with problems
--- Begin Message --- Subject: [PATCH 0/4] Add Sailfish and Salmon Date: Thu, 18 Jan 2018 08:23:05 +0100
Hi Guix,

here are two bioinformatics packages, Sailfish and Salmon, and their
dependencies.  The patch for Salmon includes a couple of private packages,
which are modified upstream packages that I unbundled from Salmon.

In previous versions of these patches I also had rapmap-for-sailfish and
rapmap-for-salmon, but since rapmap is not designed to be a shared library I
encountered all sorts of bugs when using Salmon (segfaults).  This is why the
rapmap sources are merely unpacked in the expected location; the build system
then takes care of the rest.

Ricardo Wurmus (4):
  gnu: Add libgff.
  gnu: Add libdivsufsort.
  gnu: Add sailfish.
  gnu: Add salmon.

 gnu/packages/bioinformatics.scm | 463 +++++++++++++++++++++++++++++++++++++++-
 1 file changed, 462 insertions(+), 1 deletion(-)

-- 
2.15.0





--- End Message ---
--- Begin Message --- Subject: Re: [PATCH 4/4] gnu: Add salmon. Date: Sun, 21 Jan 2018 14:20:41 +0100 User-agent: mu4e 1.0-alpha3; emacs 25.3.1
I pushed this patch series to master with commit
7762646d95cf9cad6be7e11ad465517b5819b2d2.

Closing.



--- End Message ---

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