bug#54535: closed ([PATCH] gnu: r-signac: Update to 1.6.0.)

[GNU bug Tracking System]

Your message dated Tue, 29 Mar 2022 17:46:07 +0200
with message-id <87a6d892xl.fsf@elephly.net>
and subject line [PATCH] gnu: r-signac: Update to 1.6.0.
has caused the debbugs.gnu.org bug report #54535,
regarding [PATCH] gnu: r-signac: Update to 1.6.0.
to be marked as done.

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-- 
54535: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=54535
GNU Bug Tracking System
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: r-signac: Update to 1.6.0.
>
>
>
>
> Date: 
>
> Wed, 23 Mar 2022 11:24:08 +0100
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0.
>     [propagated-inputs]: Remove AnnotationFilter, BiocGenerics,
> Biostrings, biovizBase and ggbio.
>     [propagated-inputs]: Add qlcMatrix and tidyselect.
> ---
>  gnu/packages/bioinformatics.scm | 19 ++++++++-----------
>  1 file changed, 8 insertions(+), 11 deletions(-)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index ada5965e5f..67793904f0 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -15275,11 +15275,11 @@ (define-public ensembl-vep
>        (license license:asl2.0))))
>  
>  (define-public r-signac
> -  (let ((commit "e0512d348adeda4a3f23a2e8f56d1fe09840e03c")
> -        (revision "1"))
> +  (let ((commit "458e647b503c3472b0b98c0aeca934f452e039ee")
> +        (revision "2"))
>      (package
>        (name "r-signac")
> -      (version (git-version "1.1.1" revision commit))
> +      (version (git-version "1.6.0" revision commit))
>        (source
>         (origin
>           (method git-fetch)
> @@ -15288,16 +15288,12 @@ (define-public r-signac
>                 (commit commit)))
>           (file-name (git-file-name name version))
>           (sha256
> -          (base32
> -           "1yihhrv7zs87ax61la1nb4y12lg3knraw4b20k5digbcwm8488lb"))))
> +          (base32 "1hgwpgighkvfkai80n4d2252s4sdpa4faag4ncdiylicl5wa7lbj"))))
>        (properties `((upstream-name . "Signac")))
>        (build-system r-build-system)
>        (inputs (list zlib))
>        (propagated-inputs
> -       (list r-annotationfilter
> -             r-biocgenerics
> -             r-biostrings
> -             r-biovizbase
> +       (list r-biocgenerics
>               r-data-table
>               r-dplyr
>               r-fastmatch
> @@ -15305,7 +15301,6 @@ (define-public r-signac
>               r-future-apply
>               r-genomeinfodb
>               r-genomicranges
> -             r-ggbio
>               r-ggforce
>               r-ggplot2
>               r-ggrepel
> @@ -15316,6 +15311,7 @@ (define-public r-signac
>               r-matrix
>               r-patchwork
>               r-pbapply
> +             r-qlcmatrix
>               r-rcpp
>               r-rcpproll
>               r-rsamtools
> @@ -15324,7 +15320,8 @@ (define-public r-signac
>               r-seurat
>               r-seuratobject
>               r-stringi
> -             r-tidyr))
> +             r-tidyr
> +             r-tidyselect))
>        (home-page "https://github.com/timoast/signac/";)
>        (synopsis "Analysis of single-cell chromatin data")
>        (description
> -- 
> 2.34.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: r-signac: Update to 1.6.0.
>
>
>
>
> Date: 
>
> Tue, 29 Mar 2022 17:46:07 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.6.10; emacs 28.0.50
>
>
>
>
> Thanks, I pushed it with a corrected commit message.
>
> -- 
> Ricardo
>
>
> --- End Message ---