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[O] Re: [Orgmode] Re: Org Babel and R issue with pdf latex export


From: Rainer M Krug
Subject: [O] Re: [Orgmode] Re: Org Babel and R issue with pdf latex export
Date: Mon, 28 Feb 2011 12:24:33 +0100

On Mon, Feb 28, 2011 at 8:07 AM, Ben Ward <address@hidden> wrote:
> On Sun, 2011-02-27 at 21:35 -0800, Dan Davison wrote:
>> Ben Ward <address@hidden> writes:
>>
>> > Hi,
>> >
>> > I recently installed emacs, org-mode fresh on a new install of Arch
>> > Linux. Before I had it working on Ubuntu.
>> >
>> > I've installed everything as before and used the same .emacs file I had,
>> > but if I use org to write out some R script and export to pdf via latex,
>> > then I get an empty pdf document, with only the title and Contents
>> > heading. However if I export to anything else such as html it works, and
>> > shows me code and results.
>>
>> Hi Ben,
>>
>> Are you sure this problem concerns babel/R? What happens when you export
>> an Org document to pdf without any babel stuff?
>>
>> Can you provide an example Org file that you are having trouble
>> exporting to pdf? The problem is probably in your local configuration,
>> so if no-one can jump to the solution then start from a minimal working
>> config and try to find the part of your .emacs which is causing the
>> problem.
>>
>> Dan
>>
> Hi, I've tried exporting an org file that has no code in it to PDF and
> it works without any trouble.
>
> The file I'm trying to export is:
> #+TITLE: Test
> #+AUTHOR: Ben J. Ward
> #+LATEX_CLASS: article
> #+BABEL: :session *R* :results output
> \pagebreak
>
> Test:
>
> #+begin_src R :exports both
> x<-c(1,2,3,4,5)
> y<-c(5,10,15,20)
> x
> y
> xy<-(x*y)
> xy
> #+end_src

When I use your example and export it to LaTeX,

I get this:

#########################################
% Created 2011-02-28 Mon 12:21
\documentclass[11pt]{article}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{fixltx2e}
\usepackage{graphicx}
\usepackage{longtable}
\usepackage{float}
\usepackage{wrapfig}
\usepackage{soul}
\usepackage{textcomp}
\usepackage{marvosym}
\usepackage{wasysym}
\usepackage{latexsym}
\usepackage{amssymb}
\usepackage{hyperref}
\tolerance=1000
\usepackage{color}
\usepackage{listings}
\providecommand{\alert}[1]{\textbf{#1}}
\begin{document}



\title{Test}
\author{Ben J. Ward}
\date{28 February 2011}
\maketitle

\setcounter{tocdepth}{3}
\tableofcontents
\vspace*{1cm}
The file I'm trying to export is:
\pagebreak

Test:

\lstset{language=R}
\begin{lstlisting}
x<-c(1,2,3,4,5)
y<-c(5,10,15,20)
x
y
xy<-(x*y)
xy
\end{lstlisting}

\begin{verbatim}
 [1] 1 2 3 4 5
 [1]  5 10 15 20
 Warning message:
 In x * y : longer object length is not a multiple of shorter object length
 [1]  5 20 45 80 25
\end{verbatim}



\end{document}
#########################################
So it works for me - have you tried to export to LaTex? If that works,
it is a LaTeX / pdf issue.

Rainer

>
> I can include my .emacs although it's lengthy.
>
> I uninstalled all of my emacs stuff, and installed it from the vanilla
> downloads on their respective sites, and I'm still getting the same
> result. I'm considering removing all my tex stuff and installing the
> vanilla texlive too.
>
> Thanks,
> Ben W.
>
>>
>> > I've tried even installing a version of org
>> > mode from source, using the build system my distro has, so as it's made
>> > and installed to exactly the right place, but I still don't have any
>> > luck. The texlive version I'm using is from my distro's package manager.
>> > Using C-c C-c to evaluate on the fly works. I had an issue getting org
>> > and babel to work with R on Windows 7 as well, but it was because
>> > certain tex packages were missing and I recieved a message when I tried
>> > to export, but nothing comes up here.
>> >
>> > Would the recent change:
>> > Org-babel is now inside org, remove (require 'org-babel-init)
>> >   and alike from your .emacs.
>> >   Look at http://orgmode.org/Changes.html#ob-configuration-changes
>> >   for overview of the settings.
>> > Be causing the entire issue?
>> >
>> > The .tex file I get out is thus:
>> > % Created 2011-02-28 Mon 03:47
>> > \documentclass[11pt]{article}
>> > \usepackage[utf8]{inputenc}
>> > \usepackage[T1]{fontenc}
>> > \usepackage{fixltx2e}
>> > \usepackage{graphicx}
>> > \usepackage{longtable}
>> > \usepackage{float}
>> > \usepackage{wrapfig}
>> > \usepackage{soul}
>> > \usepackage{textcomp}
>> > \usepackage{marvosym}
>> > \usepackage{wasysym}
>> > \usepackage{latexsym}
>> > \usepackage{amssymb}
>> > \usepackage{hyperref}
>> > \tolerance=1000
>> > \providecommand{\alert}[1]{\textbf{#1}}
>> > \begin{document}
>> >
>> >
>> >
>> > \title{Test}
>> > \author{Ben J. Ward}
>> > \date{28 February 2011}
>> > \maketitle
>> >
>> > \setcounter{tocdepth}{3}
>> > \tableofcontents
>> > \vspace*{1cm}
>> >
>> > \end{document}
>> >
>> > Thanks,
>> > Ben W.
>> > (Apologies if this has been sent twice, first time an error occured)
>> >
>> >
>> > _______________________________________________
>> > Emacs-orgmode mailing list
>> > Please use `Reply All' to send replies to the list.
>> > address@hidden
>> > http://lists.gnu.org/mailman/listinfo/emacs-orgmode
>>
>
>
>
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Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
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