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Re: [O] [babel] [bug] inline src_R breaks downstream src block


From: Charles C. Berry
Subject: Re: [O] [babel] [bug] inline src_R breaks downstream src block
Date: Mon, 22 Aug 2011 10:32:39 -0700

On Mon, 22 Aug 2011, Eric Schulte wrote:

Hi Chuck,

I just pushed up another fix, after which your example exports cleanly
on my system.  Please give this another try and let me know if it is now
working for you as well.

Org-mode version 7.7 (release_7.7.170.gcaaad.dirty) works fine on the example.

Thanks,

Chuck


Thanks -- Eric

"Charles C. Berry" <address@hidden> writes:

On Sun, 21 Aug 2011, Eric Schulte wrote:

I've just pushed up a change to org-exp-blocks which should fix Charles'
original problem related to conflict between inline and regular code
blocks.  Please let me know if this problem persists in the latest git
HEAD.

Just updated to

Org-mode version 7.7 (release_7.7.167.gfceb.dirty)

And I get

[...]
Code block evaluation complete.
if: Args out of range: -1, -1

after typing C-c C-e A RET y

:-(

Chuck


Thanks -- Eric

Eric Schulte <address@hidden> writes:

Bastien <address@hidden> writes:

Hi Charles,

yes, there are some problems with parsing inline source blocks.
Stephen also reported that these colon lines

  : were $\beta_2$ = src_R{round(out3$coef[3], 4)}
  : and $\beta_3$ = src_R{round(out3$coef[4], 4)}

where not exporting correctly... Eric, can you have a look at
these problems?

Thanks!


It will probably be a couple of days before I have sufficient time to
address these issues, but rest assured it is only my TODO list.

Thanks -- Eric


"Charles C. Berry" <address@hidden> writes:

,----
| | * inline code block example
| | | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
| blah blah src_R[:results output]{cat(rnorm(2))}
| CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
| #+begin_src R :eval never :exports none
| 1+2
| a <- b + c
| xyz
| #+end_src
| DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
`----


When I run C-c C-e A y, I get a buffer that misses the 'DDD...' line.

When I run C-c C-e L y, I get a buffer that ends like this:

----
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
| blah blah  \texttt{-1.172165 -0.5324113}
| CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
| \begin{src}R DDDDDDDDDDDDDDDDDDDDDDDDDDD
| | \end{document}
`----

More complicated examples exhibit other problems, I speculate that
parsing the inline src_R and setting up to find the next
#+begin_src...#+end_src instance is what has gone wrong.

FWIW, changing the :exports header to 'code' seems to give correct
results

Also, placing a dummy example like this:

,----
| #+begin_example
| #+end_example
`----

after the  src_R line produces correct results.

Chuck


Charles C. Berry                            Dept of Family/Preventive Medicine
address@hidden                      UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/  La Jolla, San Diego 92093-0901





--
Eric Schulte
http://cs.unm.edu/~eschulte/


Charles C. Berry                            Dept of Family/Preventive Medicine
address@hidden                      UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/  La Jolla, San Diego 92093-0901



--
Eric Schulte
http://cs.unm.edu/~eschulte/


Charles C. Berry                            Dept of Family/Preventive Medicine
address@hidden                      UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/  La Jolla, San Diego 92093-0901





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