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Re: [O] Bug: org-babel-tangle fails with :comments org [8.3beta (release


From: Titus von der Malsburg
Subject: Re: [O] Bug: org-babel-tangle fails with :comments org [8.3beta (release_8.3beta-1286-g20795f @ /home/malsburg/usr/share/emacs/site-lisp/org/)]
Date: Sun, 31 Jan 2016 12:37:10 -0800
User-agent: mu4e 0.9.15; emacs 25.0.50.1

There were apparently bad characters in the backtrace.  Sorry about
that.  Below it is again, plus my org config.

Debugger entered--Lisp error: (error "Nothing to comment")
  signal(error ("Nothing to comment"))
  error("Nothing to comment")
  comment-region-default(1 3 nil)
  comment-region(1 3)
  #[(text) "\205S.\306\230?\205S.     G\307V\205S.\n\203..    c\207\310`      
\311..\312\313!\2030.\313\307\fG\311\f$\210\202G.\203?.\314\307\fG.\f$\210\202G.\313\307\fG\311\f$\210\f*c\210`\"\210\311\210\315c\207"
 [comments text org-babel-tangle-uncomment-comments restricted s org-rm-props 
"no" 0 comment-region nil fboundp set-text-properties remove-text-properties 
"\n"] 7]("\n\n")
  org-babel-spec-to-string((12 "/tmp/test2.org" "file:/tmp/test2.org::*Test" 
Test:2 ((:colname-names) (:rowname-names) (:result-params "replace") 
(:result-type . value) (:comments . "org") (:shebang . "") (:cache . "no") 
(:padline . "") (:noweb . "no") (:tangle . "yes") (:exports . "code") (:results 
. "replace") (:hlines . "no") (:session . "none")) "message(2)" "\n\n"))
  #[(spec) "\306\211.\307!.\310!\211.G\311V\205..\n).\312!.   
\313\230\203&address@hidden     \315\230\2030.\316\2028.        G\311V\2058.    
\211.*\205T..+\203R.    
\313\230\203R..*\317.+Q\202T..*\211.,\205A.\320!\321.,!.-\211..\203{..-\203{...\315\230\204{.\322.-\323\"\210*\324.,!\203\223..,\325\326./\"\235\204\223.\327.,!\210\330\331!.0r.0q\210\332\216\333.1!\203\266.\3341\261..1
 
0\202\265.\210\202\266.\210\203\316..,.2\235\204\316.\335Pc\210.,.2B.2\336.!\210\337
 
.3\330\331!.4r.4q\210\340\216\324.,!\203\356.\341.,!\210db\210\342\343\344.8\"A\315\230\204..`eU\204..\335c\210.3c\210\345\316\211.,#\210.\203..\f\204..\346..5T.5.,\fB.6\347.6./\350\351$\2038../address@hidden/B\211./)..\207"
 [get-spec tangle sheb she-bang tangle-mode spec #[(name) "\302\303      
8\"A\207" [name spec assoc 4] 4] :tangle :shebang 0 :tangle-mode "yes" 
file-name-sans-extension "no" nil "." :mkdirp file-name-directory 
make-directory parents file-exists-p mapcar car delete-file generate-new-buffer 
" *temp*" #[nil "\301!\205    .\302!\207" [temp-buffer buffer-name 
kill-buffer] 2] fboundp (error) "\n" org-babel-spec-to-string buffer-string 
#[nil "\301!\205     .\302!\207" [temp-buffer buffer-name kill-buffer] 2] 
insert-file-contents assoc :padline 4 write-region 493 cl-member :test #[(a b) 
"@        @\232\207" [a b] 2] base-name ext file-name fnd m path-collector 
temp-buffer lang-f ...] 6]((12 "/tmp/test2.org" "file:/tmp/test2.org::*Test" 
Test:2 ((:colname-names) (:rowname-names) (:result-params "replace") 
(:result-type . value) (:comments . "org") (:shebang . "") (:cache . "no") 
(:padline . "") (:noweb . "no") (:tangle . "yes") (:exports . "code") (:results 
. "replace") (:hlines . "no") (:session . "none")) "message(2)" "\n\n"))
  mapc(#[(spec) "\306\211.\307!.\310!\211.G\311V\205..\n).\312!.      
\313\230\203&address@hidden     \315\230\2030.\316\2028.        G\311V\2058.    
\211.*\205T..+\203R.    
\313\230\203R..*\317.+Q\202T..*\211.,\205A.\320!\321.,!.-\211..\203{..-\203{...\315\230\204{.\322.-\323\"\210*\324.,!\203\223..,\325\326./\"\235\204\223.\327.,!\210\330\331!.0r.0q\210\332\216\333.1!\203\266.\3341\261..1
 
0\202\265.\210\202\266.\210\203\316..,.2\235\204\316.\335Pc\210.,.2B.2\336.!\210\337
 
.3\330\331!.4r.4q\210\340\216\324.,!\203\356.\341.,!\210db\210\342\343\344.8\"A\315\230\204..`eU\204..\335c\210.3c\210\345\316\211.,#\210.\203..\f\204..\346..5T.5.,\fB.6\347.6./\350\351$\2038../address@hidden/B\211./)..\207"
 [get-spec tangle sheb she-bang tangle-mode spec #[(name) "\302\303      
8\"A\207" [name spec assoc 4] 4] :tangle :shebang 0 :tangle-mode "yes" 
file-name-sans-extension "no" nil "." :mkdirp file-name-directory 
make-directory parents file-exists-p mapcar car delete-file generate-new-buffer 
" *temp*" #[nil "\301!\205    .\302!\207" [temp-buffer buffer-name 
kill-buffer] 2] fboundp (error) "\n" org-babel-spec-to-string buffer-string 
#[nil "\301!\205     .\302!\207" [temp-buffer buffer-name kill-buffer] 2] 
insert-file-contents assoc :padline 4 write-region 493 cl-member :test #[(a b) 
"@        @\232\207" [a b] 2] base-name ext file-name fnd m path-collector 
temp-buffer lang-f ...] 6] ((8 "/tmp/test2.org" "file:/tmp/test2.org::*Test" 
Test:1 ((:colname-names) (:rowname-names) (:result-params "replace") 
(:result-type . value) (:comments . "org") (:shebang . "") (:cache . "no") 
(:padline . "") (:noweb . "no") (:tangle . "yes") (:exports . "code") (:results 
. "replace") (:hlines . "no") (:session . "none")) "message(1)" "Test\n\nText 
for testing.\n\n") (12 "/tmp/test2.org" "file:/tmp/test2.org::*Test" Test:2 
((:colname-names) (:rowname-names) (:result-params "replace") (:result-type . 
value) (:comments . "org") (:shebang . "") (:cache . "no") (:padline . "") 
(:noweb . "no") (:tangle . "yes") (:exports . "code") (:results . "replace") 
(:hlines . "no") (:session . "none")) "message(2)" "\n\n")))
  #[(by-lang) "address@hidden   \"A\206..      .\307\306       
.\"A\203#.\310\306      .\"A!\206$.     \311P!..\312..\313\314\n\"-\207" 
[by-lang lang specs org-babel-tangle-lang-exts ext org-src-lang-modes assoc 
intern symbol-name "-mode" nil mapc #[(spec) 
"\306\211.\307!.\310!\211.G\311V\205..\n).\312!.    
\313\230\203&address@hidden     \315\230\2030.\316\2028.        G\311V\2058.    
\211.*\205T..+\203R.    
\313\230\203R..*\317.+Q\202T..*\211.,\205A.\320!\321.,!.-\211..\203{..-\203{...\315\230\204{.\322.-\323\"\210*\324.,!\203\223..,\325\326./\"\235\204\223.\327.,!\210\330\331!.0r.0q\210\332\216\333.1!\203\266.\3341\261..1
 
0\202\265.\210\202\266.\210\203\316..,.2\235\204\316.\335Pc\210.,.2B.2\336.!\210\337
 
.3\330\331!.4r.4q\210\340\216\324.,!\203\356.\341.,!\210db\210\342\343\344.8\"A\315\230\204..`eU\204..\335c\210.3c\210\345\316\211.,#\210.\203..\f\204..\346..5T.5.,\fB.6\347.6./\350\351$\2038../address@hidden/B\211./)..\207"
 [get-spec tangle sheb she-bang tangle-mode spec #[(name) "\302\303      
8\"A\207" [name spec assoc 4] 4] :tangle :shebang 0 :tangle-mode "yes" 
file-name-sans-extension "no" nil "." :mkdirp file-name-directory 
make-directory parents file-exists-p mapcar car delete-file generate-new-buffer 
" *temp*" #[nil "\301!\205    .\302!\207" [temp-buffer buffer-name 
kill-buffer] 2] fboundp (error) "\n" org-babel-spec-to-string buffer-string 
#[nil "\301!\205     .\302!\207" [temp-buffer buffer-name kill-buffer] 2] 
insert-file-contents assoc :padline 4 write-region 493 cl-member :test #[(a b) 
"@        @\232\207" [a b] 2] base-name ext file-name fnd m path-collector 
temp-buffer lang-f ...] 6] lang-f she-banged] 5](("R" (8 "/tmp/test2.org" 
"file:/tmp/test2.org::*Test" Test:1 ((:colname-names) (:rowname-names) 
(:result-params "replace") (:result-type . value) (:comments . "org") (:shebang 
. "") (:cache . "no") (:padline . "") (:noweb . "no") (:tangle . "yes") 
(:exports . "code") (:results . "replace") (:hlines . "no") (:session . 
"none")) "message(1)" "Test\n\nText for testing.\n\n") (12 "/tmp/test2.org" 
"file:/tmp/test2.org::*Test" Test:2 ((:colname-names) (:rowname-names) 
(:result-params "replace") (:result-type . value) (:comments . "org") (:shebang 
. "") (:cache . "no") (:padline . "") (:noweb . "no") (:tangle . "yes") 
(:exports . "code") (:results . "replace") (:hlines . "no") (:session . 
"none")) "message(2)" "\n\n")))
  mapc(#[(by-lang) "address@hidden      \"A\206..      .\307\306       
.\"A\203#.\310\306      .\"A!\206$.     \311P!..\312..\313\314\n\"-\207" 
[by-lang lang specs org-babel-tangle-lang-exts ext org-src-lang-modes assoc 
intern symbol-name "-mode" nil mapc #[(spec) 
"\306\211.\307!.\310!\211.G\311V\205..\n).\312!.    
\313\230\203&address@hidden     \315\230\2030.\316\2028.        G\311V\2058.    
\211.*\205T..+\203R.    
\313\230\203R..*\317.+Q\202T..*\211.,\205A.\320!\321.,!.-\211..\203{..-\203{...\315\230\204{.\322.-\323\"\210*\324.,!\203\223..,\325\326./\"\235\204\223.\327.,!\210\330\331!.0r.0q\210\332\216\333.1!\203\266.\3341\261..1
 
0\202\265.\210\202\266.\210\203\316..,.2\235\204\316.\335Pc\210.,.2B.2\336.!\210\337
 
.3\330\331!.4r.4q\210\340\216\324.,!\203\356.\341.,!\210db\210\342\343\344.8\"A\315\230\204..`eU\204..\335c\210.3c\210\345\316\211.,#\210.\203..\f\204..\346..5T.5.,\fB.6\347.6./\350\351$\2038../address@hidden/B\211./)..\207"
 [get-spec tangle sheb she-bang tangle-mode spec #[(name) "\302\303      
8\"A\207" [name spec assoc 4] 4] :tangle :shebang 0 :tangle-mode "yes" 
file-name-sans-extension "no" nil "." :mkdirp file-name-directory 
make-directory parents file-exists-p mapcar car delete-file generate-new-buffer 
" *temp*" #[nil "\301!\205    .\302!\207" [temp-buffer buffer-name 
kill-buffer] 2] fboundp (error) "\n" org-babel-spec-to-string buffer-string 
#[nil "\301!\205     .\302!\207" [temp-buffer buffer-name kill-buffer] 2] 
insert-file-contents assoc :padline 4 write-region 493 cl-member :test #[(a b) 
"@        @\232\207" [a b] 2] base-name ext file-name fnd m path-collector 
temp-buffer lang-f ...] 6] lang-f she-banged] 5] (("R" (8 "/tmp/test2.org" 
"file:/tmp/test2.org::*Test" Test:1 ((:colname-names) (:rowname-names) 
(:result-params "replace") (:result-type . value) (:comments . "org") (:shebang 
. "") (:cache . "no") (:padline . "") (:noweb . "no") (:tangle . "yes") 
(:exports . "code") (:results . "replace") (:hlines . "no") (:session . 
"none")) "message(1)" "Test\n\nText for testing.\n\n") (12 "/tmp/test2.org" 
"file:/tmp/test2.org::*Test" Test:2 ((:colname-names) (:rowname-names) 
(:result-params "replace") (:result-type . value) (:comments . "org") (:shebang 
. "") (:cache . "no") (:padline . "") (:noweb . "no") (:tangle . "yes") 
(:exports . "code") (:results . "replace") (:hlines . "no") (:session . 
"none")) "message(2)" "\n\n"))))
  org-babel-tangle(nil)
  funcall-interactively(org-babel-tangle nil)
  call-interactively(org-babel-tangle record nil)
  command-execute(org-babel-tangle record)
  helm-M-x(nil "org-babel-tangle")
  funcall-interactively(helm-M-x nil "org-babel-tangle")
  call-interactively(helm-M-x nil nil)
  command-execute(helm-M-x)


Emacs  : GNU Emacs 25.0.50.1 (x86_64-unknown-linux-gnu, GTK+ Version 3.14.13)
 of 2016-01-18
Package: Org-mode version 8.3.3 (release_8.3.3-523-ga90424 @ 
/home/malsburg/usr/share/emacs/site-lisp/org/)

current state:
==============
(setq
 org-tab-first-hook '(org-hide-block-toggle-maybe 
org-babel-hide-result-toggle-maybe org-babel-header-arg-expand)
 org-latex-classes '(("g-brief" "\\documentclass[12pt]{g-brief}" 
("\\section{%s}" . "\\section*{%s}")
                                                                                
        ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . 
"\\subsubsection*{%s}")
                                                                                
        ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . 
"\\subparagraph*{%s}"))
                                                                                
 ("beamerposter"
                                                                                
        "\\documentclass[final,hyperref={pdfpagelabels=false}]{beamer}\n     
\\usepackage{times}\n     \\usepackage{amsmath,amsthm, amssymb, latexsym}\n     
\\boldmath\n     \\renewcommand\\maketitle{}\n     
\\usepackage[english]{babel}\n     \\usepackage[utf8]{inputenc}\n     
\\usepackage[orientation=portrait,size=a0,scale=1.4,debug]{beamerposter}\n     
[NO-DEFAULT-PACKAGES]"
                                                                                
        ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . 
"\\subsection*{%s}")
                                                                                
        ("\\subsubsection{%s}" . "\\subsubsection*{%s}") ("\\paragraph{%s}" . 
"\\paragraph*{%s}")
                                                                                
        ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
                                                                                
 ("letter" "\\documentclass[12pt]{letter}" ("\\section{%s}" . "\\section*{%s}")
                                                                                
        ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . 
"\\subsubsection*{%s}")
                                                                                
        ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . 
"\\subparagraph*{%s}"))
                                                                                
 ("article" "\\documentclass[11pt]{article}" ("\\section{%s}" . 
"\\section*{%s}")
                                                                                
        ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . 
"\\subsubsection*{%s}")
                                                                                
        ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . 
"\\subparagraph*{%s}"))
                                                                                
 ("report" "\\documentclass[11pt]{report}" ("\\part{%s}" . "\\part*{%s}")
                                                                                
        ("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" . 
"\\section*{%s}")
                                                                                
        ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . 
"\\subsubsection*{%s}"))
                                                                                
 ("book" "\\documentclass[11pt]{book}" ("\\part{%s}" . "\\part*{%s}")
                                                                                
        ("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" . 
"\\section*{%s}")
                                                                                
        ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . 
"\\subsubsection*{%s}"))
                                                                                
 )
 org-contacts-files '("/home/malsburg/Essentials/documents/contacts.org")
 org-speed-command-hook '(org-speed-command-default-hook 
org-babel-speed-command-hook)
 org-reverse-note-order t
 org-occur-hook '(org-first-headline-recenter)
 org-metaup-hook '(org-babel-load-in-session-maybe)
 org-html-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"]
 org-log-done t
 org-latex-format-inlinetask-function 
'org-latex-format-inlinetask-default-function
 org-confirm-shell-link-function 'yes-or-no-p
 org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default
 org-latex-pdf-process '("pdflatex -interaction nonstopmode -output-directory 
%o %f" "biber `basename %f .tex`"
                                                                                
                 "pdflatex -interaction nonstopmode -output-directory %o %f"
                                                                                
                 "pdflatex -interaction nonstopmode -output-directory %o %f")
 org-latex-format-headline-function 'org-latex-format-headline-default-function
 org-default-notes-file "/home/malsburg/Essentials/documents/all.org"
 org-todo-keyword-faces '(("WAIT" . "orange"))
 org-capture-templates '(("b" "BibTeX article" plain
                                                                                
                        (file 
"/home/malsburg/Documents/Uni/Bibliographie/bibliography.bib")
                                                                                
                        "@article{%^{BibTeX key},\n  author = {%^{author}},\n  
title = {%^{title}},\n  journal = {%^{journal}},\n  volume = {%^{volume}},\n  
number = {%^{number}},\n  pages = {%^{pages}},\n  year = {%^{year}},\n  doi = 
{%^{doi}},\n  keywords = {%^{keywords}},\n  abstract = {}\n}" :prepend nil)
                                                                                
                 ("c" "Org-contact" entry (file tmalsburg-contacts-file 
:prepend nil)
                                                                                
                        "* %?\n  :PROPERTIES:\n  :N: 
SURNAME;GIVEN;MIDDLE;PREFIX;SUFFIX\n  :PHOTO: URI\n  :BDAY:\n  :ADDRESS: (WORK, 
pref)\n  :PHONE: (CELL, VOICE)\n  :PHONE: (WORK, FAX)\n  :EMAIL: (INTERNET, 
WORK, pref)\n  :TITLE:\n  :ROLE:\n  :ORG: DEPT;INST;* \n  :URL: \n  :NOTE:\n  
:REV: %t\n  :END:\n" :prepend nil)
                                                                                
                 ("i" "Idiom" entry
                                                                                
                        (file 
"/home/malsburg/Documents/Sprachen/English/idioms.org" :prepend nil) "* %?\n 
%i")
                                                                                
                 ("j" "Journal" entry (file+olp tmalsburg-agenda-file 
"Journal") "* %? %T\n %i" :prepend t)
                                                                                
                 ("n" "Notes" entry (file+olp tmalsburg-agenda-file "Notes") "* 
%? %t\n %i" :prepend t)
                                                                                
                 ("p" "Password" entry (file+olp tmalsburg-secrets-file 
"Webseiten and Email accounts")
                                                                                
                        "* %?")
                                                                                
                 ("t" "To do" entry (file+olp tmalsburg-agenda-file "Agenda" 
"TODO") "* TODO %?\n  %i"
                                                                                
                        :prepend t)
                                                                                
                 ("m" "May do" entry (file+olp tmalsburg-agenda-file "Agenda" 
"MAYDO") "* MAYDO %?\n  %i"
                                                                                
                        :prepend t)
                                                                                
                 ("r" "To read" entry (file+olp tmalsburg-agenda-file "Agenda" 
"READ") "* READ %?\n  %i"
                                                                                
                        :prepend t)
                                                                                
                 ("d" "Done" entry (file+olp tmalsburg-agenda-file "Agenda" 
"DONE")
                                                                                
                        "* DONE %?\n      CLOSED: %U\n  %i" :prepend t)
                                                                                
                 )
 org-after-todo-state-change-hook '(org-clock-out-if-current)
 org-latex-format-drawer-function #[514 "\207" [] 3 "\n\n(fn _ CONTENTS)"]
 org-capture-mode-hook '(evil-insert-state)
 org-from-is-user-regexp "\\<Titus von der Malsburg\\>"
 org-src-mode-hook '(org-src-babel-configure-edit-buffer 
org-src-mode-configure-edit-buffer)
 org-agenda-before-write-hook '(org-agenda-add-entry-text)
 org-babel-pre-tangle-hook '(save-buffer)
 org-mode-hook '(#[0 "\300\301\302\303\304$\207"
                                                                         
[org-add-hook change-major-mode-hook org-show-block-all append local] 5]
                                                                 #[nil 
"\300\301\302\303\304$\207"
                                                                         
[org-add-hook change-major-mode-hook org-babel-show-result-all append local] 5]
                                                                 
org-babel-result-hide-spec org-babel-hide-all-hashes)
 org-archive-hook '(org-attach-archive-delete-maybe)
 org-ascii-format-drawer-function #[771 ".\207" [] 4 "\n\n(fn NAME CONTENTS 
WIDTH)"]
 org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point 
org-babel-execute-safely-maybe)
 org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers 
org-cycle-show-empty-lines
                                                                        
org-optimize-window-after-visibility-change)
 org-archive-mark-done t
 org-ditaa-eps-jar-path 
"/home/malsburg/usr/share/emacs/site-lisp/contrib/scripts/DitaaEps.jar"
 org-todo-keywords '((sequence "TODO" "READ" "MAYDO" "WAIT" "|" "DONE" "NODO" 
"DELEGATED"))
 org-babel-tangle-lang-exts '(("python" . "py") ("emacs-lisp" . "el") ("elisp" 
. "el"))
 org-confirm-elisp-link-function 'yes-or-no-p
 org-metadown-hook '(org-babel-pop-to-session-maybe)
 org-ditaa-jar-path "/home/malsburg/usr/src/org-mode/contrib/scripts/ditaa.jar"
 org-html-format-headline-function 'org-html-format-headline-default-function
 org-babel-load-languages '((python . t) (emacs-lisp . t) (ditaa . t) (R . t))
 org-src-preserve-indentation t
 org-html-format-inlinetask-function 
'org-html-format-inlinetask-default-function
 org-agenda-files '("/home/malsburg/Essentials/documents/all.org")
 org-clock-out-hook '(org-clock-remove-empty-clock-drawer)
 org-confirm-babel-evaluate nil
 )

On 2016-01-31 Sun 12:08, Titus von der Malsburg wrote:
> Remember to cover the basics, that is, what you expected to happen and
> what in fact did happen.  You don't know how to make a good report?  See
>
>      http://orgmode.org/manual/Feedback.html#Feedback
>
> Your bug report will be posted to the Org-mode mailing list.
> ------------------------------------------------------------------------
>
> I used the following org-mode document:
>
>   #+PROPERTY: header-args:R :tangle yes :comments org
>   
>   * Test
>   
>   Text for testing.
>   
>   #+BEGIN_SRC R
>   message(1)
>   #+END_SRC
>   
>   #+BEGIN_SRC R
>   message(2)
>   #+END_SRC
>
> When I `org-babel-tangle', this fails after the first code block is
> written.  Stacktrace below.  Tested with current development versions of
> Emacs and org-mode.
>
> Debugger entered--Lisp error: (error "Nothing to comment")
>   signal(error ("Nothing to comment"))
>   error("Nothing to comment")
>   comment-region-default(1 3 nil)
>   comment-region(1 3)
>   #[(text) "\205&\303\230?\205&     G\304V\205&\n\203

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