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[ESPResSo] parallel computing


From: Mikheil Azatov
Subject: [ESPResSo] parallel computing
Date: Mon, 4 Oct 2010 17:57:04 -0400

Hi,

I'm using a parallel computing cluster here in UMD to run the simulation on espresso. Usually when I run the code I get this kind of messages(see below). The code still runs and gives me the results, but the problem is that the more CPU's I use the more errors I get and the slower is the simulation which results in very slow performance sometime. I was wondering if anyone ever had similar problems and could help me out here.


[0,2,0]: OpenIB on host compute-f17-2.deepthought.umd.edu was unable to find any HCAs.
Another transport will be used instead, although this may result in
lower performance.


libibverbs: Warning: RLIMIT_MEMLOCK is 32768 bytes.
    This will severely limit memory registrations.

0: Script directory: /software/dt-sw0/espresso/2.2.0b-custom/sys/lib/espresso/scripts
[compute-f17-2.deepthought.umd.edu:08426] [0,0,0] ORTE_ERROR_LOG: Resource busy in file base/pls_base_receive.c at line 127
0: Script directory: /software/dt-sw0/espresso/2.2.0b-custom/sys/lib/espresso/scripts
0: Script directory: /software/dt-sw0/espresso/2.2.0b-custom/sys/lib/espresso/scripts
[compute-f17-2.deepthought.umd.edu:08426] [0,0,0] ORTE_ERROR_LOG: Resource busy in file base/pls_base_receive.c at line 127
[compute-f17-2.deepthought.umd.edu:08426] [0,0,0] ORTE_ERROR_LOG: Resource busy in file base/pls_base_receive.c at line 127



Thanks, Mike

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