Re: [ESPResSo-users] visualization problem

[Ulf Schiller]

On 24/06/14 08:30, Narges Nikoofard wrote:
> I am simulating a system composed of around 60 polymers in a simulation
> box of length 20. In this system, many polymers cross the boundary and
> some of their monomers appear from the other side of the box. As a
> result, the bonds are stretched across the simulation box, which makes a
> mess in the visualization.
> 
> I wonder if there is a way to tell VMD not to show the bonds between the
> monomers (specially bonds that are stretched across the simulation box).
> I would be grateful if someone could kindly help me in this matter.

This is a VMD related question and has been discussed on the VMD mailing
list:

http://lmgtfy.com/?q=is+there+a+way+to+tell+VMD+not+to+show+the+bonds

Cheers,
Ulf

-- 
Dr Ulf D Schiller
Centre for Computational Science
University College London
20 Gordon Street
London WC1H 0AJ
United Kingdom