[Gsrc-commit] trunk r3750: mv MELTING to bio, other fixes

[Carl Hansen]

------------------------------------------------------------
revno: 3750
revision-id: address@hidden
parent: address@hidden
committer: address@hidden
branch nick: trunk
timestamp: Sat 2016-06-18 18:53:54 -0700
message:
  mv MELTING to bio, other fixes
removed:
  pkg/gnu/melting/               melting-20160617014725-uokjfnggs70iry9h-257
  pkg/gnu/melting/Makefile       makefile-20160617014725-uokjfnggs70iry9h-1366
  pkg/gnu/melting/config.mk      config.mk-20160617020652-kak9iq66q61yes75-1
  pkg/gnu/melting/sha256sums     sha256sums-20160617014725-uokjfnggs70iry9h-1370
modified:
  GNUmakefile.am                 
gnumakefile.am-20101220114433-luja3ml8rpou24n9-2
  pkg/bio/melting/Makefile       makefile-20160617195624-kwz1a09vkg4le6fu-124
  util/templates/package-list.html.m4 
packagelist.html.m4-20130412204301-x472oq5mm1fc6mrc-1

=== modified file 'GNUmakefile.am'
--- a/GNUmakefile.am    2016-06-18 23:42:38 +0000
+++ b/GNUmakefile.am    2016-06-19 01:53:54 +0000
@@ -134,7 +134,7 @@
 
 package-list.md.m4: manifest
        printf "define(\`PACKAGE_LIST\', \`" > package-list.tmp
-       echo "`$(RECSEL) MANIFEST.rec | $(RECFMT) -f $(HTML_PKG_TEMPLATE)`" >> 
package-list.tmp
+       echo "`$(RECSEL) -S Directory MANIFEST.rec | $(RECFMT) -f 
$(HTML_PKG_TEMPLATE)`" >> package-list.tmp
        echo "')" >> package-list.tmp
        m4 -D UPDATE_DATE="$(DATE)" package-list.tmp \
                $(HTML_LIST_TEMPLATE) > $@

=== modified file 'pkg/bio/melting/Makefile'
--- a/pkg/bio/melting/Makefile  2016-06-17 19:57:40 +0000
+++ b/pkg/bio/melting/Makefile  2016-06-19 01:53:54 +0000
@@ -38,7 +38,7 @@
 BUILD_SCRIPTS = $(WORKSRC)/buildProject.sh
 INSTALL_SCRIPTS = all
 
-BUILDDEPS = 
+BUILDDEPS =  apache-ant
 LIBDEPS =
 
 ######################################################################

=== removed directory 'pkg/gnu/melting'
=== removed file 'pkg/gnu/melting/Makefile'
--- a/pkg/gnu/melting/Makefile  2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/melting/Makefile  1970-01-01 00:00:00 +0000
@@ -1,62 +0,0 @@
-# Copyright © 2013, 2014, 2015 Brandon Invergo <address@hidden>
-#
-# This file is part of GSRC.
-#
-# GSRC is free software: you can redistribute it and/or modify it
-# under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# GSRC is distributed in the hope that it will be useful, but WITHOUT
-# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
-# or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public
-# License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with GSRC.  If not, see <http://www.gnu.org/licenses/>.
-
-NAME = MELTING
-GARNAME = melting
-UPSTREAMNAME = MELTING
-GARVERSION = 5.2.0
-HOME_URL = http://www.gnu.org/software/melting/
-DESCRIPTION = Temperature computations for a nucleic acid duplex
-define BLURB
-GNU MELTING computes the enthalpy, entropy and melting temperature of
-helix-coil transitions of a nucleic acid duplex.
-endef
-
-######################################################################
-
-DISTNAME = $(UPSTREAMNAME)$(GARVERSION)
-MASTER_SITES = $(MASTER_SOURCEFORGE)
-MASTER_SUBDIR = $(GARNAME)/files/meltingJava/melting5/
-DISTFILES = $(DISTNAME).tar.gz
-SIGFILES = 
-BUILD_SCRIPTS = $(WORKSRC)/buildProject.sh
-INSTALL_SCRIPTS = all
-
-BUILDDEPS = apache-ant
-LIBDEPS =
-
-######################################################################
-
-include ../../../gar/gar.mk
-include config.mk
-
-build-%/buildProject.sh:
-       @echo -e "[$(OK)build$(OFF)] $(MSG)Running buildProject.sh in 
$*\n$(OFF)"
-       cd $* && ./buildProject.sh
-       $(MAKECOOKIE)
-
-install-all:
-       @echo -e "[$(OK)install$(OFF)] $(MSG)Manually installing all$(OFF)"
-       @mkdir -p $(packageprefix)
-       @mkdir -p $(packageprefix)/bin
-       @mkdir -p $(packageprefix)/$(UPSTREAMNAME)/src
-       @install -m755 -D $(WORKSRC)/executable/melting 
$(packageprefix)/bin/melting
-       @install -m755 -D $(WORKSRC)/executable/melting5.jar 
$(packageprefix)/bin/melting5.jar
-       @for f in $(WORKSRC)/Data/*; do \
-               install -m644 $$f $(packageprefix)/$(UPSTREAMNAME)/src/`$$f`; \
-       done
-       $(MAKECOOKIE)

=== removed file 'pkg/gnu/melting/config.mk'
--- a/pkg/gnu/melting/config.mk 2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/melting/config.mk 1970-01-01 00:00:00 +0000
@@ -1,4 +0,0 @@
-## Configuration options for melting ##
-
-CONFIGURE_OPTS ?= 
-BUILD_OPTS ?=

=== removed file 'pkg/gnu/melting/sha256sums'
--- a/pkg/gnu/melting/sha256sums        2016-06-17 19:08:15 +0000
+++ b/pkg/gnu/melting/sha256sums        1970-01-01 00:00:00 +0000
@@ -1,1 +0,0 @@
-a3633c8f74ce383bbc3a339f99081a76c6529c10d9bdff1ad91b63e6d919a7bb  
download/MELTING5.2.0.tar.gz

=== modified file 'util/templates/package-list.html.m4'
--- a/util/templates/package-list.html.m4       2016-06-18 23:42:38 +0000
+++ b/util/templates/package-list.html.m4       2016-06-19 01:53:54 +0000
@@ -39,7 +39,7 @@
 <title>GNU SRC Package List - GNU Project - Free Software Foundation</title>
 <!--#include virtual="/server/gnun/initial-translations-list.html" -->
 <!--#include virtual="/server/banner.html" -->
-<h2>GNU SRC Package List</h2>
+<h2>GSRC Package List</h2>
 <h3>GNU Source Release Collection has now merged with Bioinformatics Source 
Release Collection</h3>
 <h3>Main pkg directories currently are: gnu gnustep gnome bio other </h3>
 
@@ -48,7 +48,7 @@
   GSRC. This list is automatically updated daily to reflect the
   latest software versions or package additions. The "GSRC Name" of a
   package is a filesystem name,  one that you would use to install the package 
via
-  GSRC,  i.e. <pre>make -C pkg/gnu/hello</pre>  The "Name" of the package
+  GSRC,  e.g. <pre>make -C pkg/gnu/hello</pre>  The "Name" of the package
   is its canonical name as might be used in text to communicate among 
humans.</p>
 
 <p><b>Last update:</b> UPDATE_DATE</p>