[Gsrc-commit] trunk r3768: move some from other to bio, other adjustments

[Carl Hansen]

------------------------------------------------------------
revno: 3768
revision-id: address@hidden
parent: address@hidden
committer: address@hidden
branch nick: trunk
timestamp: Thu 2016-06-23 11:59:15 -0700
message:
  move some from other to bio, other adjustments
renamed:
  pkg/other/perl-bioperl/ => pkg/bio/perl-bioperl/ 
perlbioperl-20160617200040-lqf8h520dfq0rtk7-9
  pkg/other/perl-ensembl/ => pkg/bio/perl-ensembl/ 
perlensembl-20160617200040-lqf8h520dfq0rtk7-10
  pkg/other/perl-ensembl-compara/ => pkg/bio/perl-ensembl-compara/ 
perlensemblcompara-20160617200040-lqf8h520dfq0rtk7-11
  pkg/other/perl-ensembl-funcgen/ => pkg/bio/perl-ensembl-funcgen/ 
perlensemblfuncgen-20160617200040-lqf8h520dfq0rtk7-12
  pkg/other/perl-ensembl-variation/ => pkg/bio/perl-ensembl-variation/ 
perlensemblvariation-20160617200040-lqf8h520dfq0rtk7-13
  pkg/other/python-biopython/ => pkg/bio/python-biopython/ 
pythonbiopython-20160617200040-lqf8h520dfq0rtk7-15
  pkg/other/python2-biopython/ => pkg/bio/python2-biopython/ 
python2biopython-20160617200040-lqf8h520dfq0rtk7-25
  pkg/other/python2-htseq/ => pkg/bio/python2-htseq/ 
python2htseq-20160617200040-lqf8h520dfq0rtk7-27
  pkg/other/python2-pysam/ => pkg/bio/python2-pysam/ 
python2pysam-20160617200040-lqf8h520dfq0rtk7-32
modified:
  pkg/gnome/accerciser/config.mk config.mk-20160617013754-nahf923pgbvwt6tf-1
  pkg/gnome/glade/sha256sums     sha256sums-20160617013746-7ygosxqw3lxxvo7f-551
  pkg/gnome/mutter/Makefile      makefile-20160617013746-7ygosxqw3lxxvo7f-1243

=== renamed directory 'pkg/other/perl-bioperl' => 'pkg/bio/perl-bioperl'
=== renamed directory 'pkg/other/perl-ensembl' => 'pkg/bio/perl-ensembl'
=== renamed directory 'pkg/other/perl-ensembl-compara' => 
'pkg/bio/perl-ensembl-compara'
=== renamed directory 'pkg/other/perl-ensembl-funcgen' => 
'pkg/bio/perl-ensembl-funcgen'
=== renamed directory 'pkg/other/perl-ensembl-variation' => 
'pkg/bio/perl-ensembl-variation'
=== renamed directory 'pkg/other/python-biopython' => 'pkg/bio/python-biopython'
=== renamed directory 'pkg/other/python2-biopython' => 
'pkg/bio/python2-biopython'
=== renamed directory 'pkg/other/python2-htseq' => 'pkg/bio/python2-htseq'
=== renamed directory 'pkg/other/python2-pysam' => 'pkg/bio/python2-pysam'
=== modified file 'pkg/gnome/accerciser/config.mk'
--- a/pkg/gnome/accerciser/config.mk    2016-06-17 19:08:15 +0000
+++ b/pkg/gnome/accerciser/config.mk    2016-06-23 18:59:15 +0000
@@ -1,5 +1,5 @@
 ## Configuration options for accerciser ##
 ## adjust as needed
 
-CONFIGURE_OPTS ?= 
+CONFIGURE_OPTS ?=  
 BUILD_OPTS ?=

=== modified file 'pkg/gnome/glade/sha256sums'
--- a/pkg/gnome/glade/sha256sums        2016-06-17 19:08:15 +0000
+++ b/pkg/gnome/glade/sha256sums        2016-06-23 18:59:15 +0000
@@ -1,1 +1,1 @@
-ecdbce46e7fbfecd463be840b94fbf54d83723b3ebe075414cfd225ddab66452  
download/glade-3.18.3.tar.xz
+82d96dca5dec40ee34e2f41d49c13b4ea50da8f32a3a49ca2da802ff14dc18fe  
download/glade-3.20.0.tar.xz

=== modified file 'pkg/gnome/mutter/Makefile'
--- a/pkg/gnome/mutter/Makefile 2016-06-17 19:08:15 +0000
+++ b/pkg/gnome/mutter/Makefile 2016-06-23 18:59:15 +0000
@@ -38,7 +38,7 @@
 SIGFILES = 
 
 # hash = 
sha256:1e8c46a81e21f382f56729282fcd0bb1c3a2067135f4b0f3651b307bf7a5b454
-BUILDDEPS = 
+BUILDDEPS = upower 
 LIBDEPS = #  cogl clutter gdk-pixbuf glib gnome-desktop gobject-introspection 
gsettings-desktop-schemas gtk+ gtk-doc intltool libcanberra libXdamage libXext 
libXfixes libXi libXinerama libXcomposite libXrandr libxkbcommon pango sm 
startup-notification upower zenity gbm libdrm libsystemd wayland xwayland
 SUGGESTS =