[Gsrc-commit] trunk r4765: update cufflinks to 2.2.1

[Carl Hansen]

------------------------------------------------------------
revno: 4765
revision-id: address@hidden
parent: address@hidden
committer: address@hidden
branch nick: trunk
timestamp: Fri 2017-09-22 21:34:29 -0700
message:
  update cufflinks to 2.2.1
modified:
  pkg/bio/cufflinks/Makefile     makefile-20160617195624-kwz1a09vkg4le6fu-95
  pkg/bio/cufflinks/sha256sums   sha256sums-20160617195624-kwz1a09vkg4le6fu-96

=== modified file 'pkg/bio/cufflinks/Makefile'
--- a/pkg/bio/cufflinks/Makefile        2016-06-17 19:57:40 +0000
+++ b/pkg/bio/cufflinks/Makefile        2017-09-23 04:34:29 +0000
@@ -1,4 +1,5 @@
 # Copyright © 2014 Brandon Invergo <address@hidden>
+# Copyright © 2017 Carl Hansen <address@hidden>
 #
 # This file is part of BioSRC.
 #
@@ -17,8 +18,9 @@
 
 NAME = Cufflinks
 GARNAME = cufflinks
-GARVERSION = 2.1.1
-HOME_URL = http://cufflinks.cbcb.umd.edu/
+GARVERSION = 2.2.1
+#HOME_URL = http://cufflinks.cbcb.umd.edu/
+HOME_URL = http://cole-trapnell-lab.github.io/cufflinks/
 DESCRIPTION = Transcript assembly and abundance estimation for RNA-Seq
 define BLURB
 Cufflinks is a tool that assembles transcripts and estimates their
@@ -29,9 +31,10 @@
 CITE = doi:10.1038/nbt.1621
 
 ######################################################################
+# 
http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.tar.gz
 
-MASTER_SITES = http://cufflinks.cbcb.umd.edu/
-MASTER_SUBDIR = downloads/
+MASTER_SITES = http://cole-trapnell-lab.github.io/
+MASTER_SUBDIR = cufflinks/assets/downloads/
 DISTFILES = $(DISTNAME).tar.gz
 
 BUILDDEPS =

=== modified file 'pkg/bio/cufflinks/sha256sums'
--- a/pkg/bio/cufflinks/sha256sums      2016-06-17 19:57:40 +0000
+++ b/pkg/bio/cufflinks/sha256sums      2017-09-23 04:34:29 +0000
@@ -1,1 +1,1 @@
-9cbaf1d8f53aa53e6d6beec12420125ee487f9de520417a6b1add3306d01a81e  
download/cufflinks-2.1.1.tar.gz
+e8316b66177914f14b3a0c317e436d386a46c4c212ca1b2326f89f8a2e08d5ae  
download/cufflinks-2.2.1.tar.gz