branch core-updates updated (5f20553 -> bd90127)

[Mark H. Weaver]

mhw pushed a change to branch core-updates
in repository guix.

      from  5f20553   gnu: r-scales: Update to 0.3.0.
      adds  59ef203   gnu: Add cvs-fast-export.
      adds  6e5e39f   gnu: Add python-netaddr.
      adds  673d1a9   gnu: Add python-stevedore.
      adds  ed56af0   gnu: Add python-oslo.config.
      adds  8c692a5   gnu: Add python-wrapt
      adds  b85c85b   gnu: Add python-iso8601.
      adds  5e412b6   gnu: Add python-monotonic.
      adds  2713527   gnu: Add python-debtcollector.
      adds  27cc9f2   gnu: Add python-oslo.utils.
      adds  5dc8762   build: ruby: Add support for tarball and directory 
sources.
      adds  239db05   gnu: system: Add Linux container module.
      adds  b429c4f   gnu: Add bio-locus.
      adds  801a0a2   Revert "gnu: Add bio-locus."
      adds  9c38b54   gnu: Add bio-locus.
      adds  17d8e33   doc: Use the recommended Scheme format.
      adds  d89e099   guix system: Gracefully handle incomplete commands.
      adds  eb95ace   download: Avoid type errors when formatting download 
progress output.
      adds  3b4d010   guix: packages: Add origin-actual-file-name.
      adds  50f5c46   guix: lint: Check for meaningful origin file names.
      adds  46e17df   emacs: Add customization groups for faces.
      adds  ea369ee   emacs: Display guix command errors in the minibuffer.
      adds  34850cd   emacs: Add modes for viewing build logs.
      adds  83d95c7   emacs: Add "View build log" action to build popup.
      adds  3500e65   lint: Add 'check-texinfo-markup' checker.
      adds  62e4cc5   gnu: Add ruby-gherkin3.
      adds  ed6094f   gnu: Add r-assertthat.
      adds  6af4813   gnu: Add r-lazyeval.
      adds  2cbed07   doc: Change authorship to "The GNU Guix Developers".
      adds  cbd0239   doc: Add guidelines for synopses and descriptions.
      adds  f4e92db   nls: Add "TRANSLATORS:" comment about Texinfo.
      adds  8ea6b30   gnu: Add r-dbi.
      adds  f9ae2c0   gnu: Add ruby-log4r.
      adds  979f9e8   gnu: sfarklib: Update to 2.24.
      adds  5702efe   gnu: Add python-oslo.serialization.
      adds  c7c7a93   gnu: Add python-oslo.context.
      adds  de34afa   gnu: Add python-webob.
      adds  2c9d967   gnu: Add python-requests-mock.
      adds  e864722   gnu: Add keepassx.
      adds  41ddebd   gnu: Add mafft.
      adds  a8be7b9   substitute: Improve readability of download progress 
report.
      adds  cd89fec   gnu: Add ruby-cucumber-core.
      adds  3ffe36f   gnu: Add emacs-deferred.
      adds  d001bb5   gnu: Add emacs-butler.
      adds  2d1db44   gnu: Add emacs-typo.
      adds  be3feaf   gnu: guile: Add guile-next
      adds  4777029   download: Only show hours in the elapsed time if 
necessary.
      adds  212d563   gnu: Add ruby-bio-logger.
      adds  c093f9f   gnu: Add scmutils.
      adds  eda1cc8   emacs: Add commands to show/hide build log phases.
      adds  b2cb869   emacs: Replace 'guix-any' with 'cl-some'.
      adds  88981dd   Add (guix scripts).
      adds  fa394eb   ui: Add 'show-derivation-outputs'.
      adds  4f740b6   store: Add 'set-build-options*'.
      adds  24a848c   gnu: Add ifstatus.
      adds  e0566f1   lint: Report lonely parentheses.
      adds  8874f76   gnu: ifstatus: Fix license.
      adds  6aaa815   gnu: Add ruby-docile.
      adds  ec79018   gnu: Add ruby-lumberjack.
      adds  70b4cf3   gnu: Add ruby-nenv.
      adds  c5d14d4   gnu: Add ruby-shellany.
      adds  d152162   gnu: Add ruby-notiffany.
      adds  8528365   gnu: Add ruby-formatador.
      adds  7ac4610   gnu: Add ruby-shindo.
      adds  28c5d42   gnu: Add ruby-libxml.
      adds  edb1598   gnu: Add bioruby.
      adds  e49b339   gnu: libmtp: Add additional MTP devices.
      adds  a5002ae   gnu: Add R/qtl.
      adds  350ba0a   gnu: Add python-prettytable
      adds  7261d9e   gnu: Add python2-pyflakes and fix python2-pyflakes-0.8.1.
      adds  d7af106   gnu: Add python2-keyring.
      adds  7d1b502   gnu: sfml: Update to 2.3.2.
      adds  127b04d   gnu: lilypond: Update to 2.19.27.
      adds  594360f   gnu: vpnc: Use https for source URL.
      adds  7ee5db1   gnu: openal: Use full path to audio backend libraries.
      adds  cc0e575   linux-boot: Mount /dev as a devtmpfs from the start.
      adds  07779d0   linux-initrd: Add LUKS/dm-crypt modules to the initrd.
      adds  8fcac19   Thank Petter.
      adds  f210647   gnu: gnu-pw-mgr: Update to 1.5.
      adds  da494da   gnu: autogen: Update to 5.18.6.
      adds  af8f9f2   gnu: Add libgee.
      adds  b0f9c4b   gnu: Add gexiv2.
      adds  fed5a68   gnu: Add shotwell.
      adds  5546114   build: Add cran-uri procedure.
      adds  a52b625   import: cran-sxml->sexp: Use cran-uri in package 
expression.
      adds  9cda362   gnu: Use cran-uri in source expressions.
      adds  675c9f4   gnu: Add r-bh.
      adds  256ccc9   gnu: Add r-evaluate.
      adds  c5bf3ab   gnu: Add r-formatr.
      adds  ad3f005   gnu: Add r-highr.
      adds  acbb40f   gnu: Add r-mime.
      adds  3f8ac35   gnu: Add r-markdown.
      adds  ea3a809   gnu: Add r-yaml.
      adds  213656b   gnu: Add r-knitr.
      adds  4f0e848   gnu: Add r-microbenchmark.
      adds  1cf1cbb   gnu: Add r-codetools.
      adds  0661b4d   gnu: Add r-pryr.
      adds  b668a95   gnu: Add r-memoise.
      adds  834f7ff   gnu: Add r-crayon.
      adds  5b9789a   gnu: Add r-testthat.
      adds  ffd4b47   gnu: Add r-r6.
      adds  2a3a8ae   gnu: Add r-dplyr.
      adds  c009bb5   Update CRAN mirrors.
      adds  91781b7   gnu: r-scales: Update to 0.3.0.
      adds  667d90d   gnu: python2-ipython: Override terminado in propagated 
inputs.
      adds  67ee7c9   emacs: Improve 'guix-prettify-regexp'.
      adds  4a4dac2   licenses: Add Zope Public License.
      adds  7ae7ca0   gnu: recutils: Add libuuid to native-inputs.
      adds  ee1c4cb   gnu: linux-libre: Update to 4.2.1.
      adds  c74cd6c   emacs: Move guile related code to "guix-guile.el".
      adds  f029f8a   emacs: Move code for evaluating to "guix-geiser.el".
      adds  f80a7a6   emacs: Add code to call guile procedures.
      adds  430505e   scripts: Add 'build-package'.
       new  bd90127   Merge branch 'master' into core-updates

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile.am                               |    2 +
 THANKS                                    |    1 +
 doc/contributing.texi                     |    4 +
 doc/emacs.texi                            |   37 ++
 doc/guix.texi                             |  113 +++++--
 doc/package-hello.scm                     |    5 +-
 emacs.am                                  |    3 +
 emacs/guix-backend.el                     |   65 +---
 emacs/guix-base.el                        |   17 +-
 emacs/guix-build-log.el                   |  333 +++++++++++++++++
 emacs/guix-command.el                     |   26 ++-
 emacs/guix-geiser.el                      |   97 +++++
 emacs/guix-guile.el                       |   54 +++
 emacs/guix-info.el                        |   49 ++--
 emacs/guix-list.el                        |   11 +-
 emacs/guix-main.scm                       |   20 +-
 emacs/guix-prettify.el                    |   11 +-
 emacs/guix-utils.el                       |   18 +-
 emacs/guix.el                             |    5 +
 gnu-system.am                             |    2 +
 gnu/build/linux-boot.scm                  |   20 +-
 gnu/packages/abiword.scm                  |   15 +-
 gnu/packages/audio.scm                    |   20 +-
 gnu/packages/autogen.scm                  |    6 +-
 gnu/packages/base.scm                     |   29 +-
 gnu/packages/bioinformatics.scm           |  155 ++++++++
 gnu/packages/compression.scm              |   14 +-
 gnu/packages/databases.scm                |    3 +-
 gnu/packages/emacs.scm                    |   74 ++++
 gnu/packages/game-development.scm         |   14 +-
 gnu/packages/gnome.scm                    |  125 +++++++
 gnu/packages/gnu-pw-mgr.scm               |    4 +-
 gnu/packages/guile.scm                    |   27 ++-
 gnu/packages/libusb.scm                   |    3 +-
 gnu/packages/linux.scm                    |    4 +-
 gnu/packages/music.scm                    |   14 +-
 gnu/packages/networking.scm               |   43 +++-
 gnu/packages/openstack.scm                |  263 ++++++++++++++
 gnu/packages/password-utils.scm           |   37 ++-
 gnu/packages/patches/libmtp-devices.patch |  554 +++++++++++++++++++++++++++++
 gnu/packages/python.scm                   |  187 ++++++++++-
 gnu/packages/ruby.scm                     |  291 +++++++++++++++
 gnu/packages/scheme.scm                   |  177 +++++++++
 gnu/packages/statistics.scm               |  462 ++++++++++++++++++++++--
 gnu/packages/version-control.scm          |   42 +++
 gnu/packages/vpn.scm                      |    2 +-
 gnu/system.scm                            |   30 +-
 gnu/system/file-systems.scm               |   15 +-
 gnu/system/linux-container.scm            |  119 ++++++
 gnu/system/linux-initrd.scm               |    1 +
 guix/build-system/r.scm                   |   12 +-
 guix/build/download.scm                   |   83 +++--
 guix/build/ruby-build-system.scm          |   80 +++--
 guix/download.scm                         |    2 +-
 guix/import/cran.scm                      |    2 +-
 guix/licenses.scm                         |    6 +
 guix/packages.scm                         |   22 ++
 guix/scripts.scm                          |  118 ++++++
 guix/scripts/archive.scm                  |    1 +
 guix/scripts/build.scm                    |   10 +-
 guix/scripts/download.scm                 |    1 +
 guix/scripts/edit.scm                     |    1 +
 guix/scripts/environment.scm              |    1 +
 guix/scripts/gc.scm                       |    1 +
 guix/scripts/graph.scm                    |   16 +-
 guix/scripts/hash.scm                     |    1 +
 guix/scripts/import/cpan.scm              |    1 +
 guix/scripts/import/cran.scm              |    1 +
 guix/scripts/import/elpa.scm              |    1 +
 guix/scripts/import/gem.scm               |    1 +
 guix/scripts/import/gnu.scm               |    1 +
 guix/scripts/import/hackage.scm           |    3 +-
 guix/scripts/import/nix.scm               |    1 +
 guix/scripts/import/pypi.scm              |    1 +
 guix/scripts/lint.scm                     |   52 +++-
 guix/scripts/package.scm                  |    1 +
 guix/scripts/publish.scm                  |    1 +
 guix/scripts/pull.scm                     |    1 +
 guix/scripts/refresh.scm                  |    1 +
 guix/scripts/size.scm                     |    1 +
 guix/scripts/substitute.scm               |   17 +-
 guix/scripts/system.scm                   |   21 +-
 guix/store.scm                            |    4 +
 guix/ui.scm                               |   62 +---
 po/guix/POTFILES.in                       |    1 +
 tests/lint.scm                            |   98 +++++-
 tests/packages.scm                        |   12 +
 tests/scripts.scm                         |   72 ++++
 tests/ui.scm                              |   40 --
 89 files changed, 3915 insertions(+), 459 deletions(-)
 create mode 100644 emacs/guix-build-log.el
 create mode 100644 emacs/guix-geiser.el
 create mode 100644 emacs/guix-guile.el
 create mode 100644 gnu/packages/patches/libmtp-devices.patch
 create mode 100644 gnu/system/linux-container.scm
 create mode 100644 guix/scripts.scm
 create mode 100644 tests/scripts.scm