[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
06/09: gnu: Add IRanges.
From: |
Ricardo Wurmus |
Subject: |
06/09: gnu: Add IRanges. |
Date: |
Mon, 21 Dec 2015 16:22:37 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 78addcb0ebce8a387be6ec43192cce7490cba794
Author: Ricardo Wurmus <address@hidden>
Date: Fri Dec 18 12:07:39 2015 +0100
gnu: Add IRanges.
* gnu/packages/bioinformatics.scm (r-iranges): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 files changed, 30 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0f10ee9..cbc83dd 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3215,6 +3215,36 @@ In addition, a few low-level concrete subclasses of
general interest (e.g.
S4Vectors package itself.")
(license license:artistic2.0)))
+(define-public r-iranges
+ (package
+ (name "r-iranges")
+ (version "2.4.6")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "IRanges" version))
+ (sha256
+ (base32
+ "00x0266sys1fc5ipa639y84p6m6mgspk2xb099vcwmd3w4hypj9d"))))
+ (properties
+ `((upstream-name . "IRanges")
+ (r-repository . bioconductor)))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "http://bioconductor.org/packages/IRanges")
+ (synopsis "Infrastructure for manipulating intervals on sequences")
+ (description
+ "This package provides efficient low-level and highly reusable S4 classes
+for storing ranges of integers, RLE vectors (Run-Length Encoding), and, more
+generally, data that can be organized sequentially (formally defined as
address@hidden objects), as well as views on these @code{Vector} objects.
+Efficient list-like classes are also provided for storing big collections of
+instances of the basic classes. All classes in the package use consistent
+naming and share the same rich and consistent \"Vector API\" as much as
+possible.")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")
- branch master updated (77bdb27 -> e2cd1d0), Ricardo Wurmus, 2015/12/21
- 01/09: gnu: Add r-gtable., Ricardo Wurmus, 2015/12/21
- 02/09: gnu: Add r-gridextra., Ricardo Wurmus, 2015/12/21
- 04/09: gnu: Add BiocGenerics., Ricardo Wurmus, 2015/12/21
- 05/09: gnu: Add S4Vectors., Ricardo Wurmus, 2015/12/21
- 03/09: gnu: Add r-acsnminer., Ricardo Wurmus, 2015/12/21
- 07/09: gnu: Add GenomeInfoDb., Ricardo Wurmus, 2015/12/21
- 06/09: gnu: Add IRanges.,
Ricardo Wurmus <=
- 08/09: gnu: Add XVector., Ricardo Wurmus, 2015/12/21
- 09/09: gnu: Add GenomicRanges., Ricardo Wurmus, 2015/12/21