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branch core-updates updated (2dbed47 -> 8c9ec20)


From: Leo Famulari
Subject: branch core-updates updated (2dbed47 -> 8c9ec20)
Date: Mon, 21 Mar 2016 16:23:25 +0000

lfam pushed a change to branch core-updates
in repository guix.

      from  2dbed47   gnu: cmake: Update to 3.5.0.
      adds  b951e26   gnu: arandr: Add "xrandr" to inputs.
      adds  a003b5b   gnu: scribus: Update to 1.5.1.
      adds  9c7f7e2   gnu: btrfs-progs: Update to 4.4.1.
      adds  82f5186   grafts: Make sure files are not created world-writable.
      adds  cd05d38   grafts: Slight simplification.
      adds  f376dc3   grafts: Consider all the outputs in the graft mapping.
      adds  9579118   gnu: bitlbee: Update to 3.4.1.
      adds  6b59fc1   gnu: Add python-backports-abc.
      adds  a724924   gnu: python-tornado: Update to 4.3.
      adds  d3e3d7f   gnu: libinput: Update to 1.2.0.
      adds  9012e11   gnu: wayland: Update to 1.10.0.
      adds  97a0859   gnu: libqmi: Update to 1.12.8.
      adds  2236da6   gnu: xrandr: Update to 1.5.0.
      adds  dbb7a08   gnu: libwnck: Rename variable for GTK+ 2 variant.
      adds  1a59b6d   gnu: git: Install symlinks instead of hard links.
      adds  823e2ed   gnu: msmtp: Install msmtpq.
      adds  daeb61f   gnu: guile-for-guile-emacs: Use guile-2.0 search paths.
      adds  aa5946e   gnu: Remove python2-pil.
      adds  8d5ceb1   gnu: curl: Use updated libssh2 [fixes CVE-2016-7087].
      adds  fea1f27   gnu: Add desmume.
      adds  d8ea278   gnu: Add oxygen-icons.
      adds  d34c594   gnu: Add qca.
      adds  550791b   gnu: Add snorenotify.
      adds  980f058   gnu: Add quassel.
      adds  27930f8   gnu: irssi: Move to irc.scm.
      adds  a61bd6a   gnu: irssi: Use 'modify-phases'.
      adds  e288f00   gnu: weechat: Move to irc.scm.
      adds  b4464d3   gnu: Add gdsl.
      adds  d29150b   gnu: Add bwa-pssm.
      adds  d1e3282   gnu: Add PePr.
      adds  e8ea01d   gnu: tiled: Update to 0.15.1.
      adds  d06fc00   gnu: tiled: Use 'modify-phases'.
      adds  c22a132   grafts: Graft recursively.
      adds  caeadfd   gnu: openssl: Replace with 1.0.2g [fixes 
CVE-2016-{0800,0705,0798,0797,0799,0702,0703,0704}].
      adds  b70fa3c   gnu: r-ggplot2: Update to 2.0.0.
      adds  8921841   gnu: r-s4vectors: Update to 0.8.11.
      adds  27acfae   gnu: r-iranges: Update to 2.4.8.
      adds  f82c8c3   gnu: r-go-db: Bioconductor changed URL for data downloads.
      adds  043c3f0   gnu: parallel: Update to 20160222.
      adds  599860d   gnu: libressl: Update to 2.2.6.
      adds  88ccca4   gnu: openssh: Update to 7.2p1.
      adds  5e8276d   gnu: ilmbase: Add patch to fix build on i686.
      adds  6150b5c   gnu: xfce: Don't wrap 'startxfce4'.
      adds  eb8065c   gnu: ilmbase: Fix typo in adding a patch.
      adds  ed742bc   gnu: openssl: Enable ssl2 at build time to ensure ABI 
compatible graft.
      adds  1cbdf82   guix archive: Use 'with-store'.
      adds  7573d30   guix build: Move '--no-grafts' to the common build 
options.
      adds  637cd12   graph: Ignore 'GUIX_BUILD_OPTIONS'.
      adds  442a6ff   tests: Disable grafts by default.
      adds  dd6e70f   gnu: Add cppcheck.
      adds  c285a40   gnu: Add password-store.
      adds  d47ad08   gnu: graphite2: Replace with 1.3.6 [unspecified security 
fixes].
      adds  bd009cd   gnu: nss: Update to 3.21.1.
      adds  b134a80   gnu: icecat: Update bundled graphite2 to 1.3.6 
[unspecified security fixes].
      adds  fad155d   packages: Factorize package specification search.
      adds  1b846da   utils: Use '@' for separating package names and version 
numbers.
      adds  f8187bd   hydra: Improve readability.
      adds  49c4fd2   hydra: Completely disable grafting.
      adds  94d609a   guix build: -S returns the replacement's source.
      adds  e90819c   gnu: Add procmail.
      adds  937690f   lint: derivation: Disable grafts, but check replacements.
      adds  55a9a8c   gnu: python-pysam, python2-pysam: Move to 
bioinformatics.scm.
      adds  d454640   gnu: python-pysam: Update to 0.8.4.
      adds  69e0e03   gnu: Add python-pybigwig.
      adds  14bda1f   gnu: deeptools: Change "propagated-inputs" to "inputs".
      adds  3acb8c8   gnu: deeptools: Update to 2.1.1.
      adds  649e9b3   gnu: python-pysam: Move cython and setuptools to native 
inputs.
      adds  16cc996   system: Add rfkill to '%base-packages'.
      adds  d0a6525   system: GRUB menu entry says "beta" instead of "alpha"
      adds  8a56a3d   po: Drop removed file 'weechat.scm'.
      adds  7016184   build: Build (guix import github) only when Guile-JSON is 
available.
      adds  fd41741   gnu: irssi: Update to 0.8.18.
      adds  7b3f268   gnu: irssi: Support proxy, socks, bot.
      adds  d8173f2   gnu: perl: Replace with patched version [fixes 
CVE-2016-2381].
      adds  581873b   gnu: mpv: Update to 0.16.0.
      adds  50b66bf   gnu: youtube-dl: Update to 2016.03.01.
      adds  5c7e1a3   build: Use (guix grafts) as needed.
      adds  abd6785   doc: Improve Info categories.
      adds  4a52671   gnu: Add byzanz.
      adds  c7658f8   gnu: exim: Update to 4.86.2 [fixes CVE-2016-1531].
      adds  b8fa5a2   emacs: hydra: Use '-' to separate job names and version 
numbers.
      adds  db0c709   emacs: Use '@' to separate package names and version 
numbers.
      adds  9c7e7ea   gnu: findnewest: Update to 0.3.
      adds  4978ffc   gnu: libgit2: Update to 0.23.4.
      adds  ffaf83d   gnu: nano: Update to 2.5.3.
      adds  fe4e698   gnu: gnome: Sync description and synopsis.
      adds  4ce783a   lint: cve: Gracefully handle HTTP errors.
      adds  44abcb2   doc: Mention syslogd configuration.
      adds  65f1b8a   gnu: python-cryptography, python-cryptography-vectors: 
Update to 1.2.3.
      adds  eda0522   gnu: letsencrypt, python-acme: Update to 0.4.2.
      adds  c8f9f24   guix build: Set the build options early.
      adds  7bfeb9d   tests: Narinfos can specify an non-empty reference list.
      adds  6581ec9   store: Add 'references/substitutes'.
      adds  c90cb5c   grafts: Use dependency information from substitutes when 
possible.
      adds  fcadd9f   packages: The result of 'bag-grafts' does not contain 
duplicates.
      adds  d4da602   grafts: Memoize intermediate results in 
'cumulative-grafts'.
      adds  b4c42a4   tests: Disable tests that would rebuild the world due to 
grafting.
      adds  03d55ee   gnu: jalv: Drop Qt-4 support.
      adds  1068f26   doc: Typos and small stylistic changes.
      adds  d7c4619   gnu: Add einstein.
      adds  451b5c5   gnu: vigra: Update to a development snapshot.
      adds  dd78e90   store: 'references/substitutes' correctly handles the 
order of substitutes.
      adds  59a4dd5   doc: Explain how to check whether security updates are 
used.
      adds  ee6a88b   gnu: alsa-modular-synth: Drop Qt 4.
      adds  afadb05   gnu: alsa-modular-synth: Insert space to separate linker 
flags.
      adds  322bb53   import: snix: Use the right 'package-name->name+version'.
      adds  ef8de98   tests: Disable grafting by default for most tests.
      adds  956ad60   services: elogind: Rely on D-Bus activation.
      adds  60a0886   services: Use 'packages->manifest' in 
'packages->profile-entry'.
      adds  b3585d9   gnu: orc: Update to 0.4.25.
      adds  e28f95a   gnu: python-pygobject: Add search path for 
GI_TYPELIB_PATH.
      adds  fa7cf82   gnu: python-pygobject: Propagate glib and libffi.
      adds  201cfb8   gnu: Add gst-python.
      adds  0e2f2ae   gnu: Add Blender.
      adds  a7e50a2   gnu: system: Add elogind cgroup mount.
      adds  c42602b   gnu: elogind: Update to 219.13.
      adds  b4f59d8   gnu: network-manager: Disable failing tests.
      adds  ef7516a   gnu: network-manager: Update to 1.0.10.
      adds  198d84b   packages: Generalize the 'cached' macro.
      adds  9775412   packages: Cache the result of 'package->bag'.
      adds  ced71ac   packages: Cache the result of 'input-grafts'.
      adds  ac00a3d   gnu: linux-libre: Update to 4.4.4.
      adds  a90d247   gnu: linux-libre: Update to 4.1.19.
      adds  165e038   gnu: libreoffice: Update to 5.0.5.2 [fixes 
CVE-2016-{0794, 0795}].
      adds  e224495   gnu: jasper: Add fixes for CVE-2016-1577, CVE-2016-2089, 
CVE-2016-2116.
      adds  16f4acb   emacs: Gracefully handle wrong package names passed to 
'guix-edit'.
      adds  1621048   guix system: Write the GC root on the target file system.
      adds  7befee3   packages: Clarify NAME-VERSION deprecation message.
      adds  95cd497   packages: Support the deprecated "NAME-VERSION" syntax.
      adds  efb107e   packages: Gracefully report packages not found.
      adds  5284339   guix build: Add '--quiet'.
      adds  1120248   system: Explicitly set umask to 022 in /etc/profile.
      adds  ebc8163   gnu: libreoffice: Enable parallel build.
      adds  00eb9fa   gnu: Add liblangtag.
      adds  1ddee42   doc: Add note on store immutability.
      adds  f1eacba   upstream: Fix 'signature-urls' coalescing.
      adds  6da23c0   gnu: complexity: Update to 1.9.
      adds  89e58e8   libotr: Update to 4.1.1 [fixes CVE-2016-2851].
      adds  5adb3a4   gnu: libotr: Remove version 3.2.1.
      adds  f973342   gnu: pidgin-otr: Update to 4.0.2.
      adds  fb9ca51   gnu: simple-scan: Update to 3.19.91.
      adds  289adba   gnu: gnuplot: Use texlive-minimal instead of texlive-bin.
      adds  aad375c   gnu: statistics: Remove import of unused texlive module.
      adds  fde6060   gnu: po4a: Use texlive-minimal instead of texlive-bin.
      adds  8bcdc23   gnu: texlive: Make texlive-bin and texlive-texmf private.
      adds  bec7f35   ui: Do not call 'port-filename' on closed file ports.
      adds  204d34f   substitute: Error out on unsupported URL schemes.
      adds  ce6027b   gnu: nautilus: Don't propagate gtk+.
      adds  82f145e   gnu: custom-gcc: Delete broken or conflicting executables.
      adds  0d88031   gnu: bind-utils: Update to 9.10.3-P4 [fixes 
CVE-2016-1285, CVE-2016-1286].
      adds  2f9862f   gnu: isc-dhcp: Update bundled bind to 9.9.8-P4 [fixes 
CVE-2016-1285, CVE-2016-1286].
      adds  9b7bd1b   substitute: Add HTTPS support.
      adds  ec27843   substitute: Optimize HTTP pipelining over TLS.
      adds  c3499ad   gnu: icecat: Add several security fixes.
      adds  83820c0   gnu: obs: Update to 0.13.2.
      adds  9720651   gnu: libass: Update to 0.13.2.
      adds  1e42d8b   gnu: complexity: Update to 1.10.
      adds  1d11617   gnu: the-silver-searcher: Update to 0.31.0.
      adds  591f1d3   gnu: lcov: Update to 1.12.
      adds  34a6f4d   gnu: cppunit: Update to 1.13.2.
      adds  a232ce4   gnu: catch: Update to 1.3.5.
      adds  efa3752   gnu: openssh: Update to 7.2p2 [fixes CVE-2016-3115].
      adds  ff22f01   gnu: dropbear: Update to 2016.72 [fixes CVE-2016-3116].
      adds  9514662   gnu: Add nload.
      adds  7bf4bd0   gnu: linux-libre: Update to 4.4.5.
      adds  a0a7143   gnu: Add bioawk.
      adds  d381962   gnu: Add powwow.
      adds  cf557af   cve: Make CPE patch level part of the version string.
      adds  baacf04   doc: Suggest `guix.scm' for upstream maintainers.
      adds  ef0f0d5   gnu: vorbis-tools: Patch buffer overflow [fixes 
CVE-2015-6749].
      adds  6a25e59   cve: Read entire CVE databases for the current year and 
the past year.
      adds  66a30a3   gnu: libevent: Update to 2.0.22 [fixes CVE-2015-6525].
      adds  b5f990a   doc: Add footnote about pointing ~/.config/guix/latest at 
user's checkout
      adds  bce6f7c   gnu: openexr: Disable broken test to fix build on i686.
      adds  81a9653   gnu: webkitgtk: Update to 2.10.8 [fixes CVE-2016-1726].
      adds  0ede252   gnu: Add fluxbox.
      adds  8e755b1   gnu: mupdf: Simplify package.
      adds  dfbe56c   gnu: mupdf: Update to 1.8.
      adds  e1c644a   gnu: accountsservice: Use HTTPS URL.
      adds  9591e11   gnu: samba: Update to 4.3.6 [fixes CVE-2015-7560, 
CVE-2016-0771].
      adds  eb4f2cd   gnu: glpk: Update to 4.59.
      adds  acd6217   gnu: git-modes: Update to 1.2.1.
      adds  e2a3d69   gnu: manaplus: Update to 1.6.3.12.
      adds  29f9abb   gnu: font-ubuntu: Update to 0.83.
      adds  edca4cb   gnu: jrnl: Update to 1.9.7.
      adds  5c85c72   gnu: libuninameslist: Update to 0.5.20150701.
      adds  7ff165d   gnu: frescobaldi: Update to 2.18.2.
      adds  03422bf   gnu: libmbim: Use HTTPS URL.
      adds  1bb4005   gnu: abcde: Update to 2.7.1.
      adds  7df8579   gnu: abcde: Use 'modify-phases'.
      adds  036fd4f   gnu: dvdisaster: Update to 0.79.5.
      adds  03aef4a   gnu: libcddb: Update to 1.3.2.
      adds  bea6d94   gnu: python-hypothesis: Update to 3.1.0.
      adds  36455a9   gnu: vdirsyncer: Update 0.9.2.
      adds  b6ecac9   gnu: Add Google Noto font.
      adds  467c498   gnu: Add Dutch Aspell dictionary.
      adds  aae6b4b   gnu: Add font-un.
      adds  9bb6d18   gnu: Add python2-atomicwrites.
      adds  d3b2931   gnu: python2-pyicu: Update to 1.9.2.
      adds  ed07b08   gnu: Split python2-pyicu into python-pyicu and 
python2-pyicu.
      adds  eed1a61   gnu: Add python-vobject.
      adds  61c30e9   gnu: Add khard.
      adds  388e05e   gnu: enlightenment: Update to 0.20.6.
      adds  846e340   gnu: Add pyicoteo.
      adds  e1a5615   build: reset-timestamps: Include directories.
      adds  535e2a2   gnu: ant: Update source URL.
      adds  5f7a1a4   build: Add Ant build system.
      adds  10b4a96   gnu: htsjdk: Use ant-build-system.
      adds  1e3fbf3   gnu: Add crossguid.
      adds  680b54c   gnu: Add dcadec.
      adds  9ced12d   gnu: kodi: Update to 16.0.
      adds  6e6a040   doc: Fix incorrect use of @xref.
      adds  3667bb6   size: Disable grafts.
      adds  f09aea1   store: 'references/substitutes' caches its results.
      adds  cc27dbc   substitute: Remove dead code.
      adds  d262a0f   http-client: Add #:keep-alive? parameter.
      adds  026ca50   substitute: Keep the initial connection alive.
      adds  264fded   grafts: Update the narinfo cache before building a 
derivation.
      adds  3a099d1   gnu: libgit2: Update to 0.24.0.
      adds  b65195c   gnu: shflags: Update to 1.2.0.
      adds  20109e0   gnu: gitolite: Update to 3.6.5.
      adds  e3009f6   doc: Add "Hardware Considerations" node.
      adds  4d343a1   doc: Clarify and consolidate modify-services 
documentation.
      adds  75b314a   gnu: linux-libre: Update to 4.5, while preserving 
linux-libre-4.4.
      adds  c29e5fd   gnu: Add xfce4-power-manager.
      adds  20095cc   gnu: xfce: Add xfce4-power-manager.
      adds  7a2413e   gnu: services: Add GNOME and XFCE desktop services.
      adds  1714e2c   gnu: git: Update to 2.7.3 [unspecified security fixes].
      adds  34dc390   gnu: Add gdk-pixbuf+svg.
      adds  5575917   gnu: mercurial: Update to 3.7.2.
      adds  892f92b   gnu: neon: Update to 0.30.1.
      adds  8e14e05   gnu: Add idle3-tools.
      adds  6a35566   gnu: Add codingquarry.
      adds  247d498   gnu: Add r-dnacopy.
      adds  409e4ac   http-client: No 'setvbuf' for non-file ports.
      adds  df061d0   build: Default to "https://mirror.hydra.gnu.org/"; for 
substitutes.
      adds  81b55bf   gnu: cm: Update to 0.3.
      adds  1cf7e31   substitute: Make room for a 'ttl' field in cached entries.
      adds  23d60ba   substitute: Honor the 'max-age' of 'Cache-Control' 
headers.
      adds  1ac94ae   build: Write emacs-autoloads.el to $(builddir).
      adds  71e2065   substitute: Honor client-provided empty URL list.
      adds  87f7625   gnu: offlineimap: Update to 6.7.0.
      adds  092dd65   gnu: guix: Update development snapshot to 71e2065.
      adds  ce362de   gnu: Fix definitions of gcc-toolchain-4.8 and 
gcc-toolchain-4.9.
      adds  d588422   gnu: slepc: Set origin file-name.
      adds  dfdf571   gnu: petsc: Fix compiler configuration references.
      adds  97966e6   build: Do not remake doc/guix.1.
      adds  e3bf5d2   gnu: mariadb: Update to 10.1.12.
      adds  08e9daf   gnu: Add freefall.
      adds  65829fe   gnu: Add perl-text-neattemplate.
      adds  f88ce39   licenses: Add Apache Software License 1.1.
      adds  fb2e072   gnu: Add mcp-plugins.
      adds  eb4fca7   gnu: Add vco-plugins.
      adds  ed17465   gnu: Add g2reverb.
      adds  8ba62f9   gnu: Add AMB plugins.
      adds  dffb6c3   gnu: Add REV plugins.
      adds  75f45d1   gnu: Add FIL plugins.
      adds  c04b4e7   gnu: Add STE plugins.
      adds  5e3161d   gnu: Add WAH plugins.
      adds  1bcae5c   gnu: emacs-pdf-tools: Use emacs-build-system for elisp 
side.
      adds  e6527d6   gnu: emacs-pdf-tools: Add missing input.
      adds  fa4b8ba   gnu: elogind: Update to 219.14.
      adds  5fe01c2   doc: GNOME is now available.
      adds  b53daad   doc: Add missing comma after @xref.
      adds  6c1305f   gnu: Add CD-HIT.
      adds  953c122   gnu: bless: Remove bundled sources for sparsehash.
      adds  2914af3   gnu: gnome-session: Add elogind input.
      adds  23bbd7d   gnu: mysql: Update to 5.7.11.
      adds  f1723b8   gnu: postgresql: Update to 9.5.1.
      adds  fc3ea24   substitute: Update progress for responses different from 
200/404.
      adds  097a951   download: Add 'close-connection'.
      adds  14d6ca3   lint: Do not leak file descriptors for TLS connections.
      adds  958fb14   substitute: Cache transient HTTP errors for 10mn.
      adds  b879b3e   substitute: Do not leak file descriptors for TLS 
connections.
      adds  e3d3546   gnu: libotr: Fix tests on mips64el.
      adds  c5e2b69   gnu: aria2: Update to 1.21.0.
      adds  019b387   gnu: vigra: Update to 1.11.0.
      adds  8961b4d   gnu: bundler: Update to 1.11.2.
      adds  0e0fd3e   gnu: linux-libre-4.4: Update to 4.4.6.
      adds  3f7a182   gnu: Add python-mutagen.
      adds  cedac81   gnu: Add python-munkres.
      adds  8975de8   gnu: Add python-musicbrainzngs.
      adds  f3b3d78   gnu: Add python-flask.
      adds  e8fee64   gnu: Add python-pyechonest.
      adds  acd7351   gnu: Add python-pylast.
      adds  603d665   gnu: Add python-cookies.
      adds  0efde7d   gnu: Add python-responses.
      adds  76b9488   gnu: Add python2-pathlib.
      adds  efe0b14   gnu: Add python-mpd2.
      adds  25a7db0   gnu: Add python-jellyfish.
      adds  13edb0e   gnu: Add python2-unicodecsv.
      adds  064503a   gnu: Add python-rarfile.
      adds  3bf429a   gnu: Add beets.
      adds  a0d7baa   gnu: gnome-session: Make sure 'gsettings' is found.
      adds  c510cbb   services: xorg: Accept session commands with arguments.
      adds  6cbc8d5   gnu: gnome: Disable hardware acceleration check via 
'gnome.desktop'.
      adds  5697fdc   gnu: r-dnacopy: Fix home page URL.
      adds  7c49ab5   gnu: kodi: Remove @acronym from description.
      adds  ef5f5c8   build: Protect against misconfiguration of localstatedir.
      adds  5658655   gnu: fontforge: Update to 20150824.
      adds  329a702   gnu: fontforge: Make builds bit-reproducible.
      adds  522773b   import: pypi: Emit 'pypi-uri' only when it yields the 
right URL.
      adds  71be99b   gnu: Add font-abattis-cantarell.
      adds  4e8b750   system: Allow account skeletons to be directories.
      adds  0bd3597   gnu: gnome: Add dependency on font-abattis-cantarell.
      adds  e71ef7a   system: Make sure fonts are searched for in the system 
profile.
      adds  35b5ca7   derivations: Add #:disallowed-references.
      adds  3f4ecf3   gexp: Add #:disallowed-references.
      adds  55e1f25   build-system/gnu: Add #:disallowed-references.
      adds  c035145   gnu: udisks: Enforce non-reference of the "doc" output.
      adds  92d40a6   Revert "build: Do not remake doc/guix.1."
      adds  83e79a1   build: Make 'guix' man page depend on scripts/guix.in.
      adds  b33d3a5   build: Build man pages in $(srcdir).
      adds  39118b5   build: Rewrite comments for man pages.
      adds  ce16d1d   gnu: ddrescue: Update to 1.21.
      adds  9128db2   gnu: Add ustr.
      adds  264df1a   gnu: Add r-iterators.
      adds  7a6f5f0   gnu: Add r-codetools.
      adds  b2cdb02   gnu: Add r-foreach.
      adds  71cafa0   gnu: Add r-doparallel.
       new  09ec508   Merge branch 'master' into core-updates
       new  8c9ec20   gnu: openssl: Enforce non-reference to perl.

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile.am                                        |   15 +-
 NEWS                                               |   17 +
 build-aux/check-available-binaries.scm             |    3 +-
 build-aux/check-final-inputs-self-contained.scm    |    3 +-
 build-aux/hydra/gnu-system.scm                     |   57 +-
 config-daemon.ac                                   |   16 +
 doc.am                                             |   61 +-
 doc/contributing.texi                              |    8 +-
 doc/guix.texi                                      |  691 ++-
 emacs.am                                           |    2 +-
 emacs/guix-base.el                                 |    2 +-
 emacs/guix-hydra.el                                |    4 +
 emacs/guix-main.scm                                |   16 +-
 emacs/guix-ui-package.el                           |    7 +-
 gnu-system.am                                      |   37 +-
 gnu/build/activation.scm                           |    5 +-
 gnu/build/install.scm                              |    2 +-
 gnu/packages.scm                                   |   89 +-
 gnu/packages/admin.scm                             |    5 +-
 gnu/packages/algebra.scm                           |    6 +-
 gnu/packages/aspell.scm                            |    8 +
 gnu/packages/audio.scm                             |  362 +-
 gnu/packages/bioinformatics.scm                    |  404 +-
 gnu/packages/bittorrent.scm                        |    4 +-
 gnu/packages/cdrom.scm                             |   89 +-
 gnu/packages/check.scm                             |   39 +-
 gnu/packages/code.scm                              |   14 +-
 gnu/packages/commencement.scm                      |    5 +-
 gnu/packages/curl.scm                              |   11 +-
 gnu/packages/databases.scm                         |   42 +-
 gnu/packages/datastructures.scm                    |   25 +-
 gnu/packages/dav.scm                               |   26 +-
 gnu/packages/disk.scm                              |   37 +-
 gnu/packages/dns.scm                               |    5 +-
 gnu/packages/emacs.scm                             |   63 +-
 gnu/packages/enlightenment.scm                     |    4 +-
 gnu/packages/fonts.scm                             |  142 +-
 gnu/packages/fontutils.scm                         |   81 +-
 gnu/packages/freedesktop.scm                       |   48 +-
 gnu/packages/game-development.scm                  |   18 +-
 gnu/packages/games.scm                             |  115 +-
 gnu/packages/gcc.scm                               |   14 +-
 gnu/packages/gettext.scm                           |    2 +-
 gnu/packages/glib.scm                              |   12 +-
 gnu/packages/gnome.scm                             |  169 +-
 gnu/packages/gnuzilla.scm                          |   24 +-
 gnu/packages/graphics.scm                          |  103 +-
 gnu/packages/gstreamer.scm                         |   60 +-
 gnu/packages/gtk.scm                               |   29 +
 gnu/packages/guile.scm                             |   12 +-
 gnu/packages/image.scm                             |   24 +-
 gnu/packages/irc.scm                               |  193 +
 gnu/packages/irssi.scm                             |   70 -
 gnu/packages/java.scm                              |    5 +-
 gnu/packages/jrnl.scm                              |    8 +-
 gnu/packages/kde-frameworks.scm                    |   24 +
 gnu/packages/kde.scm                               |   79 +
 gnu/packages/kodi.scm                              |   59 +-
 gnu/packages/libevent.scm                          |   11 +-
 gnu/packages/libreoffice.scm                       |   39 +-
 ...x-libre-i686.conf => linux-libre-4.4-i686.conf} |    0
 ...bre-x86_64.conf => linux-libre-4.4-x86_64.conf} |    0
 gnu/packages/linux-libre-4.5-i686.conf             | 8729 ++++++++++++++++++++
 gnu/packages/linux-libre-4.5-x86_64.conf           | 8541 +++++++++++++++++++
 gnu/packages/linux.scm                             |   67 +-
 gnu/packages/mail.scm                              |  123 +-
 gnu/packages/maths.scm                             |   18 +-
 gnu/packages/messaging.scm                         |   29 +-
 gnu/packages/mpd.scm                               |   33 +
 gnu/packages/music.scm                             |  171 +-
 gnu/packages/nano.scm                              |    4 +-
 gnu/packages/networking.scm                        |   23 +
 gnu/packages/package-management.scm                |    4 +-
 gnu/packages/parallel.scm                          |    4 +-
 gnu/packages/password-utils.scm                    |   54 +
 .../patches/bitlbee-configure-doc-fix.patch        |   15 -
 gnu/packages/patches/einstein-build.patch          |  401 +
 .../patches/gitolite-openssh-6.8-compat.patch      |   25 -
 gnu/packages/patches/icecat-CVE-2015-4477.patch    |   37 +
 gnu/packages/patches/icecat-CVE-2015-7207.patch    | 1140 +++
 .../patches/icecat-CVE-2016-1952-pt01.patch        |  356 +
 .../patches/icecat-CVE-2016-1952-pt02.patch        |   58 +
 .../patches/icecat-CVE-2016-1952-pt03.patch        |   60 +
 .../patches/icecat-CVE-2016-1952-pt04.patch        |   53 +
 .../patches/icecat-CVE-2016-1952-pt05.patch        |   32 +
 .../patches/icecat-CVE-2016-1952-pt06.patch        |  103 +
 gnu/packages/patches/icecat-CVE-2016-1954.patch    |   32 +
 gnu/packages/patches/icecat-CVE-2016-1960.patch    |   55 +
 gnu/packages/patches/icecat-CVE-2016-1961.patch    |   33 +
 gnu/packages/patches/icecat-CVE-2016-1962.patch    |  107 +
 gnu/packages/patches/icecat-CVE-2016-1964.patch    |   54 +
 gnu/packages/patches/icecat-CVE-2016-1965.patch    |   44 +
 gnu/packages/patches/icecat-CVE-2016-1966.patch    |   36 +
 gnu/packages/patches/icecat-CVE-2016-1974.patch    |  530 ++
 gnu/packages/patches/icecat-bug-1248851.patch      |   37 +
 .../patches/icecat-update-graphite2-pt2.patch      |  861 ++
 gnu/packages/patches/ilmbase-fix-tests.patch       |  149 +
 gnu/packages/patches/jasper-CVE-2016-1577.patch    |   19 +
 gnu/packages/patches/jasper-CVE-2016-2089.patch    |   90 +
 gnu/packages/patches/jasper-CVE-2016-2116.patch    |   19 +
 gnu/packages/patches/libotr-test-auth-fix.patch    |   15 +
 gnu/packages/patches/mupdf-buildsystem-fix.patch   |   69 -
 gnu/packages/patches/openssl-c-rehash-in.patch     |   17 +
 gnu/packages/patches/perl-CVE-2016-2381.patch      |  116 +
 .../procmail-ambiguous-getline-debian.patch        |   61 +
 .../patches/python-rarfile-fix-tests.patch         |   14 +
 gnu/packages/patches/scribus-qobject.patch         |   17 -
 .../patches/vorbis-tools-CVE-2015-6749.patch       |   44 +
 gnu/packages/pdf.scm                               |   38 +-
 gnu/packages/perl.scm                              |   49 +
 gnu/packages/python.scm                            |  445 +-
 gnu/packages/ruby.scm                              |    4 +-
 gnu/packages/samba.scm                             |    5 +-
 gnu/packages/scribus.scm                           |    5 +-
 gnu/packages/ssh.scm                               |   26 +-
 gnu/packages/statistics.scm                        |   95 +-
 gnu/packages/texlive.scm                           |    4 +-
 gnu/packages/textutils.scm                         |   43 +
 gnu/packages/tls.scm                               |   73 +-
 gnu/packages/version-control.scm                   |   56 +-
 gnu/packages/video.scm                             |   18 +-
 gnu/packages/webkit.scm                            |    6 +-
 gnu/packages/weechat.scm                           |  106 -
 gnu/packages/wm.scm                                |   72 +-
 gnu/packages/xdisorg.scm                           |   18 +-
 gnu/packages/xfce.scm                              |   73 +-
 gnu/packages/xiph.scm                              |    3 +-
 gnu/packages/xorg.scm                              |    8 +-
 gnu/services.scm                                   |    9 +-
 gnu/services/base.scm                              |   10 +-
 gnu/services/desktop.scm                           |   93 +-
 gnu/services/xorg.scm                              |    9 +-
 gnu/system.scm                                     |    7 +-
 gnu/system/file-systems.scm                        |   13 +-
 gnu/system/shadow.scm                              |   33 +-
 guix/build-system/ant.scm                          |  149 +
 guix/build-system/gnu.scm                          |   17 +-
 guix/build/ant-build-system.scm                    |  160 +
 guix/build/download.scm                            |   32 +-
 guix/build/graft.scm                               |    7 +-
 guix/cve.scm                                       |   66 +-
 guix/derivations.scm                               |   16 +-
 guix/gexp.scm                                      |   10 +-
 guix/grafts.scm                                    |  192 +-
 guix/http-client.scm                               |   11 +-
 guix/import/pypi.scm                               |   12 +-
 guix/import/snix.scm                               |   10 +-
 guix/licenses.scm                                  |    7 +-
 guix/packages.scm                                  |  241 +-
 guix/scripts/archive.scm                           |   53 +-
 guix/scripts/build.scm                             |  143 +-
 guix/scripts/environment.scm                       |    8 +-
 guix/scripts/graph.scm                             |   13 +-
 guix/scripts/import/hackage.scm                    |    2 +-
 guix/scripts/lint.scm                              |   50 +-
 guix/scripts/package.scm                           |    5 +-
 guix/scripts/size.scm                              |   33 +-
 guix/scripts/substitute.scm                        |  256 +-
 guix/scripts/system.scm                            |    8 +-
 guix/store.scm                                     |   71 +-
 guix/tests.scm                                     |   51 +-
 guix/ui.scm                                        |   14 +-
 guix/upstream.scm                                  |    4 +-
 guix/utils.scm                                     |   15 +-
 m4/guix.m4                                         |   46 +
 nix/nix-daemon/guix-daemon.cc                      |    4 +-
 po/packages/POTFILES.in                            |    1 -
 test-env.in                                        |    7 +-
 tests/cpan.scm                                     |    6 +-
 tests/derivations.scm                              |   24 +
 tests/gexp.scm                                     |   40 +-
 tests/grafts.scm                                   |  113 +-
 tests/graph.scm                                    |    4 +
 tests/guix-build.sh                                |   16 +-
 tests/guix-daemon.sh                               |   10 +-
 tests/guix-lint.sh                                 |    2 +-
 tests/guix-package.sh                              |   10 +-
 tests/monads.scm                                   |    6 +-
 tests/packages.scm                                 |  112 +-
 tests/profiles.scm                                 |    6 +-
 tests/pypi.scm                                     |    3 +-
 tests/store.scm                                    |   41 +-
 tests/ui.scm                                       |    6 +-
 tests/upstream.scm                                 |   49 +
 tests/utils.scm                                    |    5 +-
 185 files changed, 27703 insertions(+), 1809 deletions(-)
 create mode 100644 gnu/packages/irc.scm
 delete mode 100644 gnu/packages/irssi.scm
 create mode 100644 gnu/packages/kde.scm
 rename gnu/packages/{linux-libre-i686.conf => linux-libre-4.4-i686.conf} (100%)
 rename gnu/packages/{linux-libre-x86_64.conf => linux-libre-4.4-x86_64.conf} 
(100%)
 create mode 100644 gnu/packages/linux-libre-4.5-i686.conf
 create mode 100644 gnu/packages/linux-libre-4.5-x86_64.conf
 delete mode 100644 gnu/packages/patches/bitlbee-configure-doc-fix.patch
 create mode 100644 gnu/packages/patches/einstein-build.patch
 delete mode 100644 gnu/packages/patches/gitolite-openssh-6.8-compat.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2015-4477.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2015-7207.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1954.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1960.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1961.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1962.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1964.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1965.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1966.patch
 create mode 100644 gnu/packages/patches/icecat-CVE-2016-1974.patch
 create mode 100644 gnu/packages/patches/icecat-bug-1248851.patch
 create mode 100644 gnu/packages/patches/icecat-update-graphite2-pt2.patch
 create mode 100644 gnu/packages/patches/ilmbase-fix-tests.patch
 create mode 100644 gnu/packages/patches/jasper-CVE-2016-1577.patch
 create mode 100644 gnu/packages/patches/jasper-CVE-2016-2089.patch
 create mode 100644 gnu/packages/patches/jasper-CVE-2016-2116.patch
 create mode 100644 gnu/packages/patches/libotr-test-auth-fix.patch
 delete mode 100644 gnu/packages/patches/mupdf-buildsystem-fix.patch
 create mode 100644 gnu/packages/patches/openssl-c-rehash-in.patch
 create mode 100644 gnu/packages/patches/perl-CVE-2016-2381.patch
 create mode 100644 gnu/packages/patches/procmail-ambiguous-getline-debian.patch
 create mode 100644 gnu/packages/patches/python-rarfile-fix-tests.patch
 delete mode 100644 gnu/packages/patches/scribus-qobject.patch
 create mode 100644 gnu/packages/patches/vorbis-tools-CVE-2015-6749.patch
 delete mode 100644 gnu/packages/weechat.scm
 create mode 100644 guix/build-system/ant.scm
 create mode 100644 guix/build/ant-build-system.scm
 create mode 100644 tests/upstream.scm



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