02/03: gnu: Add r-bsgenome-hsapiens-ucsc-hg19.

[Ricardo Wurmus]

rekado pushed a commit to branch master
in repository guix.

commit c90a4baff6cbc35ccd6af3cdac72f314c9eceab3
Author: Ricardo Wurmus <address@hidden>
Date:   Fri Mar 18 12:15:50 2016 +0100

    gnu: Add r-bsgenome-hsapiens-ucsc-hg19.
    
    * gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): New
      variable.
---
 gnu/packages/bioinformatics.scm |   31 +++++++++++++++++++++++++++++++
 1 files changed, 31 insertions(+), 0 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8b0132d..58268dc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4769,6 +4769,37 @@ plots the corresponding sequence logo as introduced by 
Schneider and
 Stephens (1990).")
     (license license:lgpl2.0+)))
 
+(define-public r-bsgenome-hsapiens-ucsc-hg19
+  (package
+    (name "r-bsgenome-hsapiens-ucsc-hg19")
+    (version "1.4.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "http://www.bioconductor.org/packages/";
+                                  "release/data/annotation/src/contrib/"
+                                  "BSgenome.Hsapiens.UCSC.hg19_"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8"))))
+    (properties
+     `((upstream-name . "BSgenome.Hsapiens.UCSC.hg19")))
+    (build-system r-build-system)
+    ;; As this package provides little more than a very large data file it
+    ;; doesn't make sense to build substitutes.
+    (arguments `(#:substitutable? #f))
+    (propagated-inputs
+     `(("r-bsgenome" ,r-bsgenome)))
+    (home-page
+     "http://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/";)
+    (synopsis "Full genome sequences for Homo sapiens")
+    (description
+     "This package provides full genome sequences for Homo sapiens as provided
+by UCSC (hg19, February 2009) and stored in Biostrings objects.")
+    (license license:artistic2.0)))
+
 (define-public r-qtl
  (package
   (name "r-qtl")