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03/03: gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3.


From: Ricardo Wurmus
Subject: 03/03: gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3.
Date: Mon, 11 Apr 2016 13:11:25 +0000

rekado pushed a commit to branch master
in repository guix.

commit 6dc60998534bab0ed267b08025d06883d40670ac
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Mar 30 12:24:44 2016 +0200

    gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3.
    
    * gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
      New variable.
---
 gnu/packages/bioinformatics.scm |   32 ++++++++++++++++++++++++++++++++
 1 files changed, 32 insertions(+), 0 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 23dc9d2..da4a2d5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4863,6 +4863,38 @@ elegans (Worm) as provided by UCSC (ce6, May 2008) and 
stored in Biostrings
 objects.")
     (license license:artistic2.0)))
 
+(define-public r-bsgenome-dmelanogaster-ucsc-dm3
+  (package
+    (name "r-bsgenome-dmelanogaster-ucsc-dm3")
+    (version "1.4.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "http://www.bioconductor.org/packages/";
+                                  "release/data/annotation/src/contrib/"
+                                  "BSgenome.Dmelanogaster.UCSC.dm3_"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
+    (properties
+     `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
+    (build-system r-build-system)
+    ;; As this package provides little more than a very large data file it
+    ;; doesn't make sense to build substitutes.
+    (arguments `(#:substitutable? #f))
+    (propagated-inputs
+     `(("r-bsgenome" ,r-bsgenome)))
+    (home-page
+     "http://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/";)
+    (synopsis "Full genome sequences for Fly")
+    (description
+     "This package provides full genome sequences for Drosophila
+melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
+Biostrings objects.")
+    (license license:artistic2.0)))
+
 (define-public r-motifrg
   (package
     (name "r-motifrg")



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