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01/01: gnu: Add ruby-bio-kseq.
From: |
Ben Woodcroft |
Subject: |
01/01: gnu: Add ruby-bio-kseq. |
Date: |
Mon, 13 Jun 2016 22:28:59 +0000 (UTC) |
benwoodcroft pushed a commit to branch master
in repository guix.
commit e4a44a6aa5b6dcda39ab8c347d1dc68a4cc7e4f9
Author: Ben Woodcroft <address@hidden>
Date: Fri Jun 10 19:45:14 2016 +1000
gnu: Add ruby-bio-kseq.
* gnu/packages/bioinformatics.scm (ruby-bio-kseq): New variable.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 98b0034..58877f7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3926,6 +3926,34 @@ clusters.")
(home-page "https://sourceforge.net/projects/pardre/")
(license license:gpl3+)))
+(define-public ruby-bio-kseq
+ (package
+ (name "ruby-bio-kseq")
+ (version "0.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (rubygems-uri "bio-kseq" version))
+ (sha256
+ (base32
+ "1xyaha46khb5jc6wzkbf7040jagac49jbimn0vcrzid0j8jdikrz"))))
+ (build-system ruby-build-system)
+ (arguments
+ `(#:test-target "spec"))
+ (native-inputs
+ `(("bundler" ,bundler)
+ ("ruby-rspec" ,ruby-rspec)
+ ("ruby-rake-compiler" ,ruby-rake-compiler)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (synopsis "Ruby bindings for the kseq.h FASTA/Q parser")
+ (description
+ "@code{Bio::Kseq} provides ruby bindings to the @code{kseq.h} FASTA and
+FASTQ parsing code. It provides a fast iterator over sequences and their
+quality scores.")
+ (home-page "https://github.com/gusevfe/bio-kseq")
+ (license license:expat)))
+
(define-public bio-locus
(package
(name "bio-locus")