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branch core-updates updated (39d6b9c -> 79355ae)


From: Ludovic Courtès
Subject: branch core-updates updated (39d6b9c -> 79355ae)
Date: Fri, 30 Sep 2016 10:06:12 +0000 (UTC)

civodul pushed a change to branch core-updates
in repository guix.

      from  39d6b9c   gnu: address@hidden: Remove erroneous 'name' field.
      adds  35aa90a   gnu: Add Infernal.
      adds  5741e3e   doc: Fix typos.
      adds  abc4cb5   guix: ant-build-system: Fix pattern for collecting jar 
files.
      adds  fd0a23e   gnu: libnfsidmap: Set pluginpath at configure time.
      adds  8c65863   gnu: git: Update to 2.10.0.
      adds  7951812   Revert "gnu: yelp: Update to 3.21.3"
      adds  db8b5f5   gnu: rpcbind: Enable warm starts
      adds  217e0ed   gnu: mpv: Update to 0.20.0.
      adds  df90106   gnu: aria2: Update to 1.26.1.
      adds  711670c   gnu: gtk+-2: Add patch to support 
GUIX_GTK2_IM_MODULE_FILE.
      adds  234e798   gnu: gtk+: Add patch to support GUIX_GTK3_IM_MODULE_FILE.
      adds  69913ed   Merge branch 'gtk-im-modules'
      adds  3735549   gnu: gtk: Add clipit.
      adds  c4dd0de   gnu: awesome: Shorten the description.
      adds  dddcb25   gnu: Add python-odfpy.
      adds  48409ef   gnu: infernal: Limit to i686 and x86_64 systems.
      adds  7b39b7e   gnu: gzochi: Update to 0.10.1.
      adds  8cfdd64   gnu: dtc: Update to 1.4.2.
      adds  f5e4229   gnu: Add libicns.
      adds  b11cf99   gnu: rage: Update to 0.2.1.
      adds  adbd7fa   gnu: Add p7zip.
      adds  696cb41   gnu: Add remind.
      adds  f7c9b01   gnu: nano: Update to 2.7.0.
      adds  14d5ca2   ui: Initialize %FILE-PORT-NAME-CANONICALIZATION to #f.
      adds  2ff0da0   file-systems: Always use (guix build syscalls).
      adds  7ca8735   Add (guix modules).
      adds  239c6e2   system: Use 'source-module-closure' where needed.
      adds  e49e74f   gnu: bitcoin-core: Update to 0.13.0.
      adds  d84a586   gnu: libvpx: Update to 1.6.0.
      adds  818db70   gnu: Add ola.
      adds  2426223   gnu: Add mb2md.
      adds  35b3806   gnu: Remove elementary, evas-generic-loaders, 
emotion-generic-players.
      adds  f99cfc1   gnu: borg: Rebuild generated C files.
      adds  ddfd10c   gnu: font-gnu-unifont: Update to 9.0.02.
      adds  105d4ee   gnu: Add perl-uri-template.
      adds  ba24828   gnu: Add perl-class-errorhandler.
      adds  951e924   gnu: Add perl-datetime-format-mail.
      adds  8a0773a   gnu: Add perl-datetime-format-w3cdtf.
      adds  46173a0   gnu: Add perl-feed-find.
      adds  b51b2bf   gnu: Add perl-uri-fetch.
      adds  3cf1744   gnu: Add perl-unicode-utf8.
      adds  428e446   gnu: Add perl-path-tiny.
      adds  0c1bab3   gnu: Add perl-xml-xpath.
      adds  b2696a5   gnu: Add perl-xml-atom.
      adds  60e8c2a   gnu: Add perl-test-manifest.
      adds  a022b23   gnu: Add perl-xml-rss.
      adds  246455c   gnu: Add perl-xml-feed.
      adds  823c829   gnu: Add perl-www-opensearch.
      adds  4e83571   gnu: Add address@hidden
      adds  901c1aa   gnu: Add libtoxcore.
      adds  c2b411c   gnu: Add freealut.
      adds  43bec6d   gnu: qemu: Update to 2.7.0 [fixes CVE-2016-7116].
      adds  fea1422   gnu: slock: Update to 1.3.
      adds  26ffb69   syscalls: Use #:return-errno? when it is available.
      adds  0c90ed5   gnupg: Honor $GUIX_GPG_COMMAND and default to 'gpg'.
      adds  c6f0b0f   gnu: orc: Update to 0.4.26.
      adds  462b567   gnu: orc: Use 'modify-phases'.
      adds  5e50f84   gnu: gst-plugins-base: Add opus support.
      adds  58458a6   gnu: gst-plugins-ugly: Add mpg123 support.
      adds  6779b93   gnu: gst-plugins-bad: Remove unreferenced qt input.
      adds  8372394   gnu: Fix pre-2.7.0 qemu builds.
      adds  5e814f6   gnu: btrfs-progs: Update to 4.7.2.
      adds  f2e7be4   system: vm: Remove -net user flag.
      adds  6526d43   activation: Allow home directories to be created under 
/var/lib.
      adds  f2901d8   services: Export initrc.
      adds  ec2e2f6   services: syslog: Use syslog-configuration.
      adds  99c53e2   gnu: Add prefix to license imports in (gnu packages 
display-managers).
      adds  901385c   gnu: Add greenisland.
      adds  15791fa   gnu: Add sddm.
      adds  935644c   services: Add sddm service.
      adds  40b3f52   gnu: Add cairo-xcb.
      adds  dfe05a5   gnu: Add xorg-server-xwayland.
      adds  24e051c   gnu: Add weston.
      adds  274563e   gnu: Add ding.
      adds  83457fe   gnu: Add teximpatient.
      adds  763899f   gnu: Add openssl-next.
      adds  7247ecd   gnu: scribus: Update to 1.5.2.
      adds  a7199b7   activation: Don't fail if /var/lib exists.
      adds  3ed3c10   gnu: slock: Fix CVE-2016-6866.
      adds  751c704   gnu: Add tintin++.
      adds  a287faf   gnu: lua-5.1: install pkg-config file.
      adds  a616962   gnu: go: Update to 1.7.
      adds  618089f   gnu: Add gzstream.
      adds  6fabb19   gnu: Add eschalot.
      adds  dd72173   guix package: Clarify upgrade code.
      adds  c8c2570   profiles: Add manifest-transaction helper procedures.
      adds  5239f3d   guix package: Build up the transaction incrementally.
      adds  03763d6   profiles: Export <manifest-pattern> accessors.
      adds  01afdab   packages: Add 'package-superseded' and associated support.
      adds  967cfd1   gnu: paredit: Rename to 'emacs-paredit'.
      adds  375cef6   updated: gnu: add asn1c
      adds  abc114b   gnu: webkitgtk: Update to 2.12.5.
      adds  b393a44   gnu: Add perl-curses.
      adds  8dc0eca   gnu: rottlog: Use 'modify-phases'.
      adds  11e7463   gnu: rottlog: Set default value for 'packdir'.
      adds  268ad34   gnu: rottlog: Read configuration files from /etc/rottlog.
      adds  309e523   gnu: rottlog: Adjust the default 'weekly' config.
      adds  e4a01b7   gnu: inetutils: Use /var as the localstatedir.
      adds  afa54a3   services: syslog: Use a PID file.
      adds  392a4e1   guix hash: Add --exclude-vcs option.
      adds  e0d7b42   gnu: Add mpop.
      adds  96dbc93   Add Zsh completion file.
      adds  e9006d0   bash completion: Redirect 'guix' stderr to /dev/null.
      adds  f07f7d8   bash completion: Complete subcommands and their options.
      adds  c4947d0   gnu: Add tcp-wrappers.
      adds  8f3afba   gnu: Enable tcp-wrappers for nrircd.
      adds  fe44766   gnu: guile-irregex: Remove hard-coded Guile effective 
version.
      adds  4b74a29   gnu: guile-minikanren: Remove hard-coded Guile effective 
version.
      adds  ffc72ec   gnu: guile-json: Remove hard-coded Guile effective 
version.
      adds  757ce0f   gnu: guile-commonmark: Remove hard-coded "/2.0" in 
installation directories.
      adds  947a5d4   gnu: Add 'package-for-guile-2.2' procedure and use it.
      adds  d6a07ee   gnu: Add rpc-daemon service
      adds  e79b3c3   gnu: man-db: Use modify-phases syntax.
      adds  ea55a39   gnu: man-db: Patch path to iconv.
      adds  29e53b9   doc: Update package count.
      adds  23c43e5   gnu: imagemagick: Update to 6.9.5-9.
      adds  c0bc4b8   gnu: graphicsmagick: Update to 1.3.25 [fixes 
CVE-2016-2317].
      adds  9e258dc   gnu: lightweight-desktop.tmpl: Fix typo.
      adds  a232d2c   gnu: openal: Update to 1.17.2.
      adds  7fb461d   gnu: curl: Update replacement to 7.50.2 [fixes 
CVE-2016-7141].
      adds  1c6c0ad   services: ntpd: Use a dedicated directory for drift file.
      adds  fdf14c6   gnu: Add edit warning to generated grub.cfg files
      adds  e56e5b1   gnu: Add surfraw.
      adds  d443199   gnu: Add python-git-review.
      adds  78325fa   gnu: kmscon: Clarify synopsis, description, and supported 
systems.
      adds  7326944   gnu: kmscon: Build the man page.
      adds  5acf00f   gnu: kmscon: Enable elogind support.
      adds  585b72c   gnu: Add libhdate.
      adds  9626257   gnu: ardour: Update to 5.3.
      adds  e0479f5   gnu: file-roller: Update to 3.20.3 [fixes CVE-2016-7162].
      adds  b9b3440   gnu: Add mlocate.
      adds  1fa3e33   gnu: Add steghide.
      adds  a2319d2   gnu: Add Swish-e.
      adds  2e3f185   gnu: Add Tomb.
      adds  b5fc72f   gnu: ardour: Do not contact ardour.org on start.
      adds  31769b9   gnu: guile: Search for .go files in "/site-ccache", not 
"/ccache".
      adds  19b2ea1   gnu: Fix wrong import of '(gnu packages zsh)'.
      adds  44e8559   gnu: llvm: propagate zlib input.
      adds  ab78618   gnu: llvm: Build shared libraries.
      adds  28f45dd   gnu: c-reduce: Upgrade to 2.5.0.
      adds  c2783e2   gnu: geoclue: Update to 2.4.4.
      adds  b5fed90   gexp: Remove outdated comment.
      adds  ebdfd77   gexp: Compilers can now provide an "expander".
      adds  a9e5e92   gexp: Add 'file-append'.
      adds  44d5f54   system: grub: Allow arbitrary kernel file names in 
'menu-entry'.
      adds  ab20d74   system: Build the initrd file name with 'file-append'.
      adds  4b6da26   gnu: bamm: Update to 1.7.3.
      adds  876d80d   gnu: openjpeg: Update to 2.1.1.
      adds  0f97e7e   gnu: openjpeg-2.*: Fix CVE-2016-7163.
      adds  4ce0177   gnu: openjpeg: Fix CVE-2016-5157.
      adds  c41d97b   gnu: mupdf: Update to 1.9a.
      adds  2884c63   gnu: Remove openjpeg-2.0.
      adds  56ab55d   gnu: letsencrypt: Superseded by certbot.
      adds  e714797   gnu: pdf: Remove erroneous module import.
      adds  1cdecf2   gexp: Store compilers in a hash table for O(1) lookup.
      adds  9e41130   system: Use 'file-append' to denote file names.
      adds  766c148   gnu: glew: Update to 2.0.0.
      adds  eb64bde   gnu: Add filteraudio.
      adds  3b38d78   gnu: Add utox.
      adds  50feff8   gnu: tig: Update to 2.2.
      adds  d0e11e8   gnu: tig: Add search completion and history support.
      adds  2203e4c   gnu: tig: Install man pages.
      adds  0e790a7   gnu: Add edi.
      adds  84be3b9   gnu: Add mash.
      adds  debf417   gnu: python-pillow: Update to 3.3.1.
      adds  b30565b   gnu: Add python-cachecontrol.
      adds  dd44762   gnu: python-cachecontrol: Correct parentheses.
      adds  cab1760   gnu: icedtea-8: Hardcode dynamically loaded libraries.
      adds  4bf184c   gnu: address@hidden: Update to 4.1.32.
      adds  5ed67c8   gnu: address@hidden: Update to 4.4.20.
      adds  7c1fedd   gnu: linux-libre: Update to 4.7.3.
      adds  5f4d09b   gnu: go-1.7: Update to 1.7.1.
      adds  c543b4e   gnu: gnurl: Update to 7.50.2-1.
      adds  b9fe72b   gnu: gnurl: Use 'modify-phases'.
      adds  90d8ef6   gnu: gnunet: Use 'modify-phases'.
      adds  381000d   gnu: python-git-review: Wrap it so 'git', 'ssh' and 'scp' 
are found.
      adds  317d3b4   services: Add login-service.
      adds  46ec270   services: Add kmscon service.
      adds  6c86cef   gnu: Add sonata
      adds  9f20f7f   gnu: libupnp: Update to 1.6.20.
      adds  2932ab9   install: Use login-service.
      adds  cbe2cc0   gnu: jpegoptim: Update to 1.4.4.
      adds  35eade9   gnu: jbig2dec: Update to 0.13.
      adds  4d4a6ed   gnu: zimg: Update to 2.2.1.
      adds  6d8e14d   gnu: Add python2-pyqt-4.
      adds  29e83e1   gnu: messaging: Use license: prefix.
      adds  aeca1c0   gnu: Add pybitmessage.
      adds  ee6bc65   gnu: mpd: Remove unused glib-or-gtk-build-system module.
      adds  55fb8d7   gnu: texinfo: Add 6.3.
      adds  8d4169a   gnu: Add Impressive.
      adds  b6337f3   gnu: tbb: Update to 2017.
      adds  44177bc   gnu: vapoursynth: Update to 33.1.
      adds  57dbf57   gnu: parallel: Update to 20160822.
      adds  d18197a   gnu: Add python-django.
      adds  b53fc29   gnu: Add python-django-simple-math-captcha.
      adds  f32ffa0   gnu: emacs: Use https for elpa.gnu.org.
      adds  ac8a642   gnu: tre: Move to (gnu packages regex).
      adds  378920d   gnu: python-django: Add patch file.
      adds  39fb629   gnu: (cfitsio, wcslib): Change return values of custom 
phases.
      adds  2d04789   gnu: Add r-quadprog.
      adds  ccd9b15   gnu: r-pracma: Update to 1.9.5.
      adds  4df0cb8   gnu: r-jsonlite: Update to 1.0.
      adds  cc1446a   gnu: r-htmlwidgets: Update to 0.7.
      adds  02a8753   gnu: r-curl: Update to 1.2.
      adds  2c575bb   gnu: r-vegan: Update to 2.4-1.
      adds  0b54b4c   gnu: r-acsnminer: Update to 0.16.8.25.
      adds  2b1cc79   gnu: r-s4vectors: Update to 0.10.3.
      adds  3e4c0c6   gnu: Add r-segmented.
      adds  3b851cd   gnu: r-seqinr: Update to 3.3-1.
      adds  4fa7091   gnu: r-genomeinfodb: Update to 1.8.7.
      adds  bbf53cb   gnu: r-variantannotation: Update to 1.18.7.
      adds  01ebbb1   gnu: r-limma: Update to 3.28.21.
      adds  10e479a   gnu: r-genomicranges: Update to 1.24.3.
      adds  44f711d   gnu: r-biocparallel: Update to 1.6.6.
      adds  5aaa12d   gnu: r-digest: Update to 0.6.10.
      adds  cb27d6b   gnu: r-rcpp: Update to 0.12.7.
      adds  21f45c9   gnu: r-mgcv: Update to 1.8-14.
      adds  8b2f96e   gnu: r-permute: Update to 0.9-4.
      adds  deb265a   gnu: r-plyr: Update to 1.8.4.
      adds  1f94ede   gnu: r-stringi: Update to 1.1.1.
      adds  bf1e9e4   gnu: r-stringr: Update to 1.1.0.
      adds  6d6a917   gnu: r-lazyeval: Update to 0.2.0.
      adds  5b67bd6   gnu: r-dbi: Update to 0.5-1.
      adds  2d037a2   gnu: r-mime: Update to 0.5.
      adds  ad28491   gnu: r-knitr: Update to 1.14.
      adds  344d532   gnu: r-crayon: Update to 1.3.2.
      adds  ef82bd5   gnu: r-r6: Update to 2.1.3.
      adds  e2ad022   gnu: r-xml2: Update to 1.0.0.
      adds  0330620   gnu: r-multitaper: Update to 1.0-12.
      adds  81147fe   gnu: r-rversions: Update to 1.0.3.
      adds  130c3c8   gnu: r-openssl: Update to 0.9.4.
      adds  e58498b   gnu: r-httr: Update to 1.2.1.
      adds  e2cfac4   gnu: r-rstudioapi: Update to 0.6.
      adds  3bb9708   gnu: r-devtools: Update to 1.12.0.
      adds  348bb8d   gnu: r-withr: Update to 1.0.2.
      adds  a589acf   gnu: Add r-tibble.
      adds  b90314b   gnu: Add r-hms.
      adds  8c6e2b8   gnu: r-readr: Update to 1.0.0.
      adds  bdfc2c9   gnu: r-plotrix: Update to 3.6-3.
      adds  fce4dfd   gnu: r-lattice: Update to 0.20-34.
      adds  27f10d3   gnu: r-futile-logger: Update to 1.4.3.
      adds  b9ab3b0   gnu: r-lambda-r: Update to 1.1.9.
      adds  7931531   gnu: r-sparsem: Update to 1.72.
      adds  f791b68   gnu: r-dt: Update to 0.2.
      adds  c3253ce   gnu: r-irlba: Update to 2.1.1.
      adds  1b7f85f   gnu: r-tidyr: Update to 0.6.0.
      adds  5e67507   gnu: r-rcpparmadillo: Update to 0.7.400.2.0.
      adds  de1eebd   gnu: r-dplyr: Update to 0.5.0.
      adds  87a7c55   gnu: r-rmarkdown: Update to 1.0.
      adds  401528b   gnu: r-go-db: Update to 3.3.0.
      adds  5cc7cff   gnu: r-org-hs-eg-db: Update to 3.3.0.
      adds  019be09   gnu: r-org-ce-eg-db: Update to 3.3.0.
      adds  6ab7ca2   gnu: r-org-dm-eg-db: Update to 3.3.0.
      adds  d108c21   gnu: r-org-mm-eg-db: Update to 3.3.0.
      adds  e9aba1e   gnu: Add nfs-utils
      adds  974e2b2   gnu: gnutls: Replace with 3.5.4 [fixes GNUTLS-SA-2016-3].
      adds  0581c27   gnu: Add acme-client.
      adds  d8a1be6   gnu: certbot: Improve synopsis.
      adds  2642231   gnu: bowtie: Update to 2.2.9.
      adds  db3cc00   gnu: vim: Update to 8.0.
      adds  f51940b   gnu: vim: Make builds bit-reproducable.
      adds  9a078f4   gnu: vapoursynth: Remove mips support.
      adds  f34365b   gnu: mpv: Remove extra input.
      adds  4f6ec7e   gnu: youtube-dl: Update to 2016.09.11.1.
      adds  d2262d7   gnu: python-py3status: Update to 3.1.
      adds  f40841e   gnu: dlib: Remove unused fftw from inputs.
      adds  8eaf53e   gnu: dlib: Do not build dlib twice for tests.
      adds  4fba38d   gnu: dlib: Disable failing tests.
      adds  4df0762   gnu: Add libbdplus.
      adds  8dd6fc5   gnu: Add libaacs.
      adds  6c0cd76   gnu: libbluray: Enable libaacs and libbdplus support.
      adds  66daf78   gnu: Add seqtk.
      adds  23de5cb   gnu: guile-wm: Add '.desktop' file.
      adds  89bcf3f   gnu: Add schismtracker.
      adds  885009c   gnu: module-init-tools: Prevent line wrapping.
      adds  614d173   gnu: linux-libre: Use modify-phases.
      adds  6d7ef2a   gnu: linux-libre: Use system->architecture.
      adds  499fb7e   gnu: linux-libre: Apply %boot-logo patch in origin.
      adds  9416459   gnu: linux-libre: Move kernel configuration to configure 
phase.
      adds  4b42703   gnu: linux-libre: Add support for cross-compilation.
      adds  d21047d   services: nginx: Actually check if configuration is valid.
      adds  0507720   gnu: tinyxml: Fix typo in description.
      adds  c033c19   gnu: ruby: Remove string-append call with single argument.
      adds  d15e2ef   gnu: python-prompt-toolkit: Update to 1.0.7.
      adds  243db82   gnu: Add python-lit, python2-lit.
      adds  e42a077   gnu: dtc: Remove patch-paths phase.
      adds  20f9c67   gnu: Add u-boot-beagle-bone-black.
      adds  8feb56b   gnu: u-boot-vexpress_ca9x4: Rename to u-boot-vexpress.
      adds  0a1d859   gnu: lispf4: Remove unused inputs key.
      adds  c258807   gnu: Use make-linux-libre.
      adds  90c18c3   gnu: make-linux-libre: Add extra-options parameter.
      adds  a6d0132   gnu: make-linux-libre: Add extra-version parameter.
      adds  fd6e0de   gnu: make-linux-libre: Add zImage to output.
      adds  3129b9c   gnu: make-linux-libre: Add supported-systems parameter.
      adds  78edccc   gnu: linux-libre: Use kmod.
      adds  cde7c23   gnu: Add linux-libre-arm-generic.
      adds  de459dc   gnu: Add linux-libre-beagle-bone-black.
      adds  cff0ade   gnu: libnfsidmap: Move to (gnu packages linux).
      adds  035d359   gnu: module-init-tools: Move to (gnu packages linux).
      adds  f26dd9b   gnu: Add microcom
      adds  812b3c1   gnu: ldc: Fix build failure.
      adds  995e509   gnu: Add femtolisp.
      adds  0b75986   gnu: make-linux-libre: Only use configuration-file when 
one is provided.
      adds  d6feaf6   gnu: kernel-config: Remove redundant file-exists? check.
      adds  dbc6d37   doc: "Various Services" -> "Miscellaneous Services"
      adds  ea833d3   gnu: guile-redis: Remove hard-coded Guile effective 
version.
      adds  85313be   gnu: Add guile2.2-redis.
      adds  76f31f0   gnu: Add direnv.
      adds  931bd7f   gnu: Add tinyxml2.
      adds  b6f87ec   gnu: encfs: Update to 1.9.
      adds  271447f   gnu: Remove unused, obsolete, private rlog.
      adds  4a3b6aa   doc: #:target takes a GNU triplet, not a system type.
      adds  8bebe73   gnu: Add emacs-es-mode.
      adds  ddda533   gnu: guile-next: Update to 2.1.4.
      adds  362bc74   gnu: mysql: Update to 5.7.15 [fixes CVE-2016-6662].
      adds  b5b2c11   gnu: mariadb: Update to 10.1.17 [fixes CVE-2016-6662 ].
      adds  2a0ed32   gnu: curl: Update replacement to 7.50.3 [fixes 
CVE-2016-7167].
      adds  7ddacf8   gnu: links: Update to 2.13.
      adds  6ea541e   gnu: links: Use 'modify-phases'.
      adds  2792a6b   gnu: perl-gd: Disable tests.
      adds  49735d8   gnu: perl-image-magick: Disable tests.
      adds  16c6a01   gnu: Add perl-net-statsd.
      adds  fe71eee   gnu: Add libpqxx.
      adds  253745d   gnu: hydra: Update to 20151030.1ff48da.
      adds  9918477   gnu: gnurl: Update to 7.50.3.
      adds  74c0282   gnu: Add mhonarc.
      adds  66f95b2   gnu: Add python-pytest-pep8.
      adds  df94a6b   gnu: Add python-pytest-flakes.
      adds  5467ea6   gnu: Add python-natsort.
      adds  ab179ea   gnu: Add gnome-dictionary.
      adds  d002121   gnu: nss-certs and nss: Update to 3.26
      adds  797a5cf   gnu: Add darkhttpd.
      adds  4a187c5   gnu: chibi-scheme: Use 'modify-phases'.
      adds  25847b3   gnu: kernel-config: Find configuration file for i686.
      adds  dd65f3b   gnu: Add mcelog.
      adds  71af71d   gnu: hexchat: Update to 2.12.1.
      adds  60880ac   gnu: iodine: Use net-tools' ifconfig with an absolute 
path.
      adds  9bd259d   gnu: polipo: Use 'modify-phases'.
      adds  7f39e13   gnu: prosody: Don't generate example SSL certificates.
      adds  f687539   gnu: Add par2cmdline.
      adds  c72c124   gnu: Add r-rtsne.
      adds  c533589   gnu: Add r-e1071.
      adds  78acbcb   gnu: Add nanovg-for-extempore.
      adds  5a82f93   gnu: Add assimp.
      adds  ac2a38a   gnu: Add stb-image-for-extempore.
      adds  921cb13   gnu: Add llvm-for-extempore.
      adds  2a9b10c   gnu: Add kiss-fft-for-extempore.
      adds  38098bf   gnu: Add portmidi-for-extempore.
      adds  9159562   gnu: Add Extempore.
      adds  8f65585   doc: "filesystem" -> "file system"
      adds  6aeaba8   gnu: gnome-session: Update to 3.20.2.
      adds  082138e   gnu: diffoscope: Update to 60.
      adds  4efb9c5   gnu: Add python-glances.
      adds  5d87088   gnu: Add sendmail
      adds  e4360e1   gnu: gtk+ use modify-phases
      adds  0bb9461   gnu: autoconf-archive: Update to 2016.09.16.
      adds  bff8be8   gnu: xorriso: Update to 1.4.6.
      adds  4d3fa5a   gnu: Add python-pika.
      adds  4d98bfa   gnu: Add python-peewee.
      adds  5cb2fe4   gnu: Add python-promise.
      adds  44547e5   gnu: Add python-pytest-mock.
      adds  05b7a59   gnu: Add python-graphql-core.
      adds  7ee5157   gnu: Add python-graphql-relay.
      adds  de2966c   gnu: Add python-sqlalchemy-utils.
      adds  23b563d   gnu: Add python-pytest-django.
      adds  894810c   gnu: Add python-django-filter.
      adds  ddc63a5   gnu: Add python-graphene.
      adds  2570239   gnu: Add python-consul.
      adds  12f839f   gnu: Add python-cov-core.
      adds  0aea283   gnu: Add python-nose2.
      adds  153e58c   gnu: Add python-bcrypt.
      adds  d488d5d   gnu: Add python-nautilus.
      adds  b8ea520   gnu: Add onionshare.
      adds  c4605e4   gnu: onionshare: Fix build.
      adds  ded5d02   gnu: wireshark: Update to 2.2.0.
      adds  4ce6030   gnu: python-biopython: Update to 1.68.
      adds  8c8da13   gnu: python-biopython: Use 'python2-variant'.
      adds  4b1a152   gnu: Add python2-biopython-1.66.
      adds  7bba95b   gnu: seqmagick: Use BioPython 1.66.
      adds  de96ea2   gnu: python-biom-format: Move inputs to propagated-inputs.
      adds  c2c84ad   gnu: racket: Update to 6.6
      adds  eb24341   gnu: Add r-biocinstaller.
      adds  6b87c10   gnu: Add Mr. Rescue.
      adds  6f27fbd   gnu: address@hidden: Update to 2.8.8.
      adds  5de2a99   gnu: efl: Update to 1.18.1.
      adds  bf307a7   gnu: efl: Add recommended build flags.
      adds  71654df   services: Add 'simple-service'.
      adds  4a84a48   services: console-font: A single service handles all the 
VTs.
      adds  dfdaea3   gnu: python-django, python2-django: Fix propagated- and 
native-inputs.
      adds  d404a6f   gnu: gnupg: Fix test failure.
      adds  8120205   gnu: python2-cov-core: Use strip-python2-variant.
      adds  006a832   gnu: emacs-org: Update to 20160912.
      adds  55ac38f   gnu: address@hidden: Update to 4.1.33.
      adds  a8b9c57   gnu: address@hidden: Update to 4.4.21.
      adds  6509a1e   gnu: linux-libre: Update to 4.7.4.
      adds  846b253   gnu: emacs: Update to 25.1.
      adds  92330ba   gnu: efl: Remove hardcoding pulseaudio and libsndfile.
      adds  232ccbe   services: Use 'source-module-closure' for (gnu build 
activation).
      adds  e465d9e   ui: Do not shadow '_' where it's used as a literal syntax 
match.
      adds  9d126aa   build: Allow builds with Guile 2.2.
      adds  be86b7a   gnu: Add bind
      adds  b04a52a   gnu: Add python-requests-oauthlib.
      adds  e6d5873   gnu: chess: Update to 6.2.3.
      adds  c0d47ca   gnu: lua: Use MYCFLAGS instead of CFLAGS.
      adds  03d8505   gnu: lua: Add lua-lgi.
      adds  22037a3   gnu: awesome: Update to 3.5.9.
      adds  c84253f   gnu: chez-scheme: Remove arm support.
      adds  8824da4   gnu: vlc: Use liba52.
      adds  f75bb2c   gnu: simple-scan: Update to 3.22.0.1.
      adds  e2ab5a0   gnu: python-click: Hardlink path to 'locale'.
      adds  375f224   gnu: python-click: Use 'pypi-uri'.
      adds  79558df   gnu: vsearch: Update to 2.1.0.
      adds  171091a   gnu: lm-sensors: Update to 3.4.0.
      adds  f7fe5f7   gnu: femtolisp: Remove custom "patch-makefile" phase.
      adds  6e8faf7   gnu: jellyfish: Limit to x86_64.
      adds  538c0e3   gnu: openlibm: Remove support for mips.
      adds  3f1c722   gnu: r-htmltools: Ensure temporary files can be deleted.
      adds  b78891b   gnu: r-rmarkdown: Ensure temporary files can be deleted.
      adds  39162ee   gnu: extempore: Only build on x86_64.
      adds  1df0060   gnu: irssi: Update to 0.8.20 [fixes CVE-2016-{7044,7045}].
      adds  c5776c8   gnu: perl-io-socket-ssl: Update to 2.038.
      adds  951da52   gnu: diamond: Update to 0.8.22.
      adds  b8367c0   gnu: offlineimap: Update to 7.0.7.
      adds  a143e1b   gnu: webkitgtk: Update to 2.14.0.
      adds  62d0009   gnu: prank: Allow building on 32-bit machines.
      adds  50f701d   gnu: openssl: Replace with 1.0.2i [security fixes].
      adds  163d93a   gnu: openssl-next: Update to 1.1.0a [security fixes].
      adds  c788c5f   gnu: Add ytalk
      adds  0dbb7ac   gnu: plink: Set endian-ness on more architectures.
      adds  7adc698   gnu: python-fake-factory: Update to 0.7.2.
      adds  cda5e76   gnu: python2-django: Fix typo in native-inputs.
      adds  5895f19   gnu: reptyr: Remove mips64el support.
      adds  67fa6ab   gnu: imagemagick: Update to 6.9.5-10.
      adds  cc5e16a   gnu: Add ghc-base16-bytestring.
      adds  301e762   gnu: Add ghc-binary.
      adds  eddc692   gnu: ghc-cryptonite: Update to 0.19.
      adds  c763b8a   gnu: Add ghc-cryptohash.
      adds  7c14128   gnu: Add ghc-data-ordlist.
      adds  1a0dbf0   gnu: Add ghc-haskeline.
      adds  d58dc85   gnu: Add ghc-regex-applicative.
      adds  7e444db   gnu: Add ghc-regex-tdfa.
      adds  fe3c62c   gnu: Add ghc-regex-compat-tdfa.
      adds  ab12bd3   gnu: Add ghc-tasty-th.
      adds  e9e519b   gnu: Add ghc-sandi.
      adds  a71f861   gnu: Add ghc-bytestring-handle.
      adds  f827033   gnu: Add ghc-tar.
      adds  54c3734   gnu: Add ghc-transformers.
      adds  027b797   gnu: Add ghc-findbin.
      adds  d52ca22   gnu: Add ghc-patience.
      adds  41167bd   gnu: Add ghc-monads-tf.
      adds  1d9db65   gnu: Add ghc-bytestring.
      adds  e1a56bb   gnu: Add ghc-colour.
      adds  4fec5cd   gnu: Add ghc-directory.
      adds  3b281f5   gnu: Add ghc-process.
      adds  6e0741f   gnu: Add ghc-wl-pprint-text.
      adds  ce242fd   gnu: ghc-fgl: Update to 5.5.3.0.
      adds  d4cca6b   gnu: Add ghc-fgl-arbitrary.
      adds  3db8827   gnu: Add ghc-graphviz.
      adds  e7e2f03   gnu: Add ghc-array.
      adds  6aab9ba   gnu: Add ghc-constraints.
      adds  2b41f4a   gnu: Add ghc-lifted-async.
      adds  ddd5955   gnu: Add ghc-system-filepath-bootstrap.
      adds  3f7aa10   gnu: Add ghc-system-fileio-bootstrap.
      adds  25b3bdb   gnu: Add ghc-shelly.
      adds  7e06c4a   gnu: Add ghc-options-bootstrap.
      adds  8ea9448   gnu: Add ghc-chell.
      adds  475d366   gnu: Add ghc-chell-quickcheck-bootstrap.
      adds  c92d944   gnu: Add ghc-chell-quickcheck.
      adds  58c85b1   gnu: Add ghc-options.
      adds  23feb6e   gnu: Add ghc-system-filepath.
      adds  10a03d6   gnu: Add ghc-system-fileio.
      adds  71b611b   gnu: Add ghc-transformers-0.4.2.0.
      adds  cdf26f4   build: clean-go: warn about stray .go files.
      adds  6941965   gnu: boost: Upgrade to 1.61.0.
      adds  1a0ae57   gnu: boost: Add -j for build.
      adds  bd368c7   gnu: ccache: Use modify-phases.
      adds  56f33f3   gnu: ccache: Upgrade to 3.3.1.
      adds  5989d4e   gnu: synfig: Fix isnan error.
      adds  fc3b2cb   gnu: retroarch: Update to 1.3.6.
      adds  4781820   gnu: randomjungle: Only build on x86_64 and i686.
      adds  48b419e   gnu: ngs-sdk: Update to 1.2.5.
      adds  40974c9   gnu: ncbi-vdb: Update to 2.7.0.
      adds  646a843   gnu: sra-tools: Update to 2.7.0.
      adds  8f30957   gnu: r-curl: Respect CURL_CA_BUNDLE variable.
      adds  236d522   gnu: giac-xcas: Update to 1.2.2-81.
      adds  5bd6270   gnu: orpheus: Fix build on mips64el.
      adds  047cd01   gnu: orpheus: Use 'modify-phases'.
      adds  0f5de84   gnu: Add nickle.
      adds  03ddad8   gnu: flashrom: Update to 0.9.9
      adds  93666cf   gnu: Add enet.
      adds  8058880   gnu: Add cmark.
      adds  54021cd   gnu: Add gnome-calculator.
      adds  6fc48c2   gnu: Add gforth.
      adds  d7b342d   system: 'read-boot-parameters' reads the 'initrd' 
parameter.
      adds  0f65f54   system: grub.cfg uses correct file names when store is 
not in root partition.
      adds  0ab57b0   gnu: tor: Update to 0.2.8.8.
      adds  a8f3d49   gnu: privoxy: Update to 3.0.26.
      adds  94c5dc8   gnu: Add pam-krb5
      adds  dfcce0c   gnu: address@hidden: Update to 4.4.22.
      adds  1535c0a   gnu: linux-libre: Update to 4.7.5.
      adds  58d04db   gnu: python-virtualenv: Update to 15.0.3.
      adds  9f58932   gnu: epiphany: Update to 3.22.0.
      adds  7acd71d   gnu: epiphany: Drop NSS and libwnck.
      adds  5babe52   system: Don't emit a GRUB 'search' command when passed a 
GRUB file name.
      adds  9311722   gnu: Add optipng.
      adds  57a31ef   gnu: tcc: Disable build on MIPS.
      adds  bbed0ab   gnu: Add r-hwriter.
      adds  356c6d6   gnu: Add r-rjson.
      adds  2213730   gnu: Add r-rpart.
      adds  8c6de58   gnu: Add r-annotate.
      adds  07a664c   gnu: Add r-geneplotter.
      adds  2d21d44   gnu: Add r-hmisc.
      adds  2301fd3   gnu: Add r-genefilter.
      adds  ad34f0a   gnu: Add r-deseq2.
      adds  092197a   gnu: Add r-matrix.
      adds  0c77fd5   gnu: Add r-pheatmap.
      adds  8e1bfc7   gnu: Add r-sendmailr.
      adds  0d90462   gnu: Add r-backports.
      adds  929d4aa   gnu: Add r-checkmate.
      adds  cd26ec3   gnu: Add r-bbmisc.
      adds  dc4fb16   gnu: Add r-fail.
      adds  9e33027   gnu: Add r-batchjobs.
      adds  e816377   gnu: Add r-annotationforge.
      adds  cd9e7dc   gnu: Add r-rbgl.
      adds  ad740ff   gnu: Add r-gseabase.
      adds  1a1931f   gnu: Add r-category.
      adds  89f40c5   gnu: Add r-gostats.
      adds  cb99d45   gnu: Add r-shortread.
      adds  7f903d7   gnu: Add r-systempiper.
      adds  684f29b   gnu: Add r-grohmm.
      adds  f3cfe45   gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.
      adds  2c9f478   profiles: manifest-lookup-package: Optionally match 
version prefix.
      adds  7ddc178   profiles: Build GTK+ input module cache.
      adds  3ef08dc   gnu: qtractor: Update to 0.7.9.
      adds  204adc3   gnu: azr3: Fix libsigc++ build errors.
      adds  af8de20   gnu: vsearch: Update to 2.1.1.
      adds  7f5ca39   gnu: tbb: Use modify-phases syntax.
      adds  ba4529c   gnu: ghc-tls: Update to 1.3.8.
      adds  1a545a1   gnu: tbb: Fail on test errors.
      adds  1da48e4   gnu: ghc-tagsoup: Update to 0.14.
      adds  ae87e4f   gnu: ghc-pandoc-types: Update to 1.16.1.1.
      adds  8f1e2dc   gnu: ghc-highlighting-kate: Update to 0.6.3.
      adds  2e9b127   gnu: ghc-cmark: Update to 0.5.3.1.
      adds  5a502d9   gnu: ghc-texmath: Update to 0.8.6.5.
      adds  bc600b8   gnu: ghc-pandoc: Update to 1.17.2.
      adds  675d7ae   gnu: ncbi-vdb: Only build on i686 and x86_64.
      adds  58478cc   gnu: libftdi: Propagate the libusb input.
      adds  8be42e5   gnu: openssl: Update replacement to 1.0.2j [fixes 
CVE-2016-7052].
      adds  9ad0965   gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].
      adds  3c185b2   Add missing exports.
      adds  8a54c0e   guix build: Gracefully handle packages without source for 
'-S'.
      adds  fd49eb2   gnu: python-pysam: Update to 0.9.1.4.
      adds  c2efe1a   gnu: Add python-pyxb.
      adds  e301bfc   gnu: python2-pbcore: Update to 1.2.10.
      adds  bdc7be5   gnu: Add bcftools.
      adds  397d463   gnu: python-pysam: Use 'modify-phases'.
      adds  dff26b2   gnu: python-pysam: Delete bundled htslib.
      adds  f536dce   gnu: python-pysam: Enable tests.
      adds  67f6681   gnu: Add python-termcolor.
      adds  99caa6f   gnu: python-plastid: Update to 1.4.6.
      adds  a777535   gnu: aria2: Update to 1.27.1.
      adds  66329c2   gnu: New default Dovecot service postmaster_address
      adds  b61d962   gnu: Add libxml++-2.
      adds  c8105e8   gnu: Add libnet6.
      adds  22a3cff   gnu: Add obby.
      adds  e907093   gnu: Add gobby.
      adds  419fb3f   gnu: femtolisp: Don't build on mips64el or armhf.
      adds  3973e13   gnu: Add gloox.
      adds  32f70e1   gnu: Add gctp.
      adds  b9bc6e8   gnu: expat: Fix regression caused by fix for 
CVE-2016-0718.
      adds  e8c9b01   gnu: Add python-q.
      adds  cc132e0   gnu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776].
      adds  8be2428   gnu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes 
CVE-2016-2776].
      adds  8c120e4   gnu: zip: Use 'modify-phases'.
      adds  9da3c49   gnu: btrfs-progs: Update to 4.7.3.
      adds  ffabdc1   gnu: encfs: Update to 1.9.1.
      adds  a7c9b06   gnu: libressl: Update to 2.5.0.
      adds  89eb758   gnu: Add dbus-c++.
      adds  9a4c032   gnu: Add gsm.
      adds  974aaf7   gnu: telephony: Add 'license:' prefix.
      adds  615c999   gnu: opendht: Propagate msgpack.
      adds  a3af70a   gnu: Add picocom.
      adds  33619c3   gnu: Add sdcc.
      adds  50dbc03   gnu: %default-extra-linux-options: Remove redundant 
options.
      adds  e4e9c0a   gnu: make-linux-libre: Install device tree files.
      adds  7a06300   gnu: linux-libre-beagle-bone-black: Remove kernel variant.
      adds  fbe9c10   import: Reorder imports in (guix import utils).
      adds  263ac57   import: Move string->license to importers.
      adds  59b2034   import: utils: Add spdx-string->license.
      adds  11e296e   import: utils: Refactor license->symbol.
      adds  b411517   gnu: git: Add input perl-term-readkey for 'git-svn'.
      adds  dac65f9   gnu: higan: Update to version 101.
      adds  415ee28   gnu: nestopia-ue: Update to version 1.47.
      adds  b2fe918   gnu: attic: Superseded by borg.
      adds  1d51585   gnu: Add xonsh.
      adds  37042a0   gnu: tilda: Update to 1.3.3.
      adds  2320e76   gnu: sra-tools: Fix build on i686.
      adds  5564c01   doc: Give the full key fingerprint instead of the long 
key ID.
      adds  d06ce04   gnu: dbus-c++: License has "or later" clause.
      adds  b9f7895   Revert "gnu: %default-extra-linux-options: Remove 
redundant options."
      adds  0da1b70   gnu: c-ares: Update to 1.12.0 [fixes CVE-2016-5180].
      adds  154c71e   gnu: Add m17n-db.
      adds  a80b60f   gnu: Add m17n-lib.
      adds  01c5c21   gnu: emacs: Build with m17n support.
      adds  86d8f6d   services: Add 'openssh-service'.
       new  79355ae   Merge branch 'master' into core-updates

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile.am                                        |   11 +
 configure.ac                                       |   21 +-
 doc/emacs.texi                                     |    6 +-
 doc/guix.texi                                      |  378 ++++++-
 etc/completion/bash/guix                           |   41 +-
 etc/completion/zsh/_guix                           |  456 +++++++++
 gnu/build/activation.scm                           |    3 +
 gnu/build/file-systems.scm                         |   34 +-
 gnu/local.mk                                       |   35 +-
 gnu/packages.scm                                   |   11 +-
 gnu/packages/admin.scm                             |  103 +-
 gnu/packages/adns.scm                              |    8 +-
 gnu/packages/algebra.scm                           |   30 +-
 gnu/packages/animation.scm                         |    5 +
 gnu/packages/astronomy.scm                         |    9 +-
 gnu/packages/audio.scm                             |  123 ++-
 gnu/packages/autotools.scm                         |    4 +-
 gnu/packages/backup.scm                            |  132 ++-
 gnu/packages/bioinformatics.scm                    |  846 ++++++++++++++--
 gnu/packages/bittorrent.scm                        |    4 +-
 gnu/packages/boost.scm                             |    8 +-
 gnu/packages/c.scm                                 |    3 +
 gnu/packages/calendar.scm                          |   55 +-
 gnu/packages/ccache.scm                            |   22 +-
 gnu/packages/cdrom.scm                             |    8 +-
 gnu/packages/certs.scm                             |    4 +-
 gnu/packages/ci.scm                                |   17 +-
 gnu/packages/compression.scm                       |  112 ++-
 gnu/packages/crypto.scm                            |  209 +++-
 gnu/packages/curl.scm                              |    4 +-
 gnu/packages/databases.scm                         |   72 +-
 gnu/packages/debug.scm                             |   20 +-
 gnu/packages/dictionaries.scm                      |   64 +-
 gnu/packages/disk.scm                              |    4 +-
 gnu/packages/display-managers.scm                  |  164 +++-
 gnu/packages/django.scm                            |  195 ++++
 gnu/packages/dns.scm                               |   80 +-
 gnu/packages/emacs.scm                             |  149 ++-
 gnu/packages/enlightenment.scm                     |  149 +--
 gnu/packages/finance.scm                           |    6 +-
 gnu/packages/flashing-tools.scm                    |   11 +-
 gnu/packages/fonts.scm                             |    4 +-
 gnu/packages/freedesktop.scm                       |   75 ++
 gnu/packages/game-development.scm                  |    4 +-
 gnu/packages/games.scm                             |  124 ++-
 gnu/packages/gd.scm                                |    1 +
 gnu/packages/gforth.scm                            |   60 ++
 gnu/packages/gl.scm                                |   31 +-
 gnu/packages/glib.scm                              |   44 +
 gnu/packages/gnome.scm                             |   98 +-
 gnu/packages/gnunet.scm                            |   51 +-
 gnu/packages/gnupg.scm                             |    1 +
 gnu/packages/gnuzilla.scm                          |    4 +-
 gnu/packages/gobby.scm                             |  131 +++
 gnu/packages/golang.scm                            |   18 +-
 gnu/packages/graphics.scm                          |   31 +-
 gnu/packages/grub.scm                              |    8 +-
 gnu/packages/gstreamer.scm                         |   34 +-
 gnu/packages/gtk.scm                               |   71 +-
 gnu/packages/guile-wm.scm                          |   85 +-
 gnu/packages/guile.scm                             |  202 ++--
 gnu/packages/haskell.scm                           | 1028 +++++++++++++++++++-
 gnu/packages/image.scm                             |  176 +++-
 gnu/packages/imagemagick.scm                       |   11 +-
 gnu/packages/irc.scm                               |    8 +-
 gnu/packages/java.scm                              |   27 +
 gnu/packages/ldc.scm                               |   16 +-
 gnu/packages/libftdi.scm                           |    4 +-
 gnu/packages/libupnp.scm                           |    4 +-
 gnu/packages/lighting.scm                          |   75 ++
 gnu/packages/links.scm                             |   40 +-
 gnu/packages/linux.scm                             |  446 +++++----
 gnu/packages/lisp.scm                              |   65 +-
 gnu/packages/llvm.scm                              |   28 +-
 gnu/packages/lua.scm                               |   86 +-
 gnu/packages/machine-learning.scm                  |   39 +-
 gnu/packages/mail.scm                              |  195 +++-
 gnu/packages/man.scm                               |   31 +-
 gnu/packages/markdown.scm                          |   31 +
 gnu/packages/maths.scm                             |   61 +-
 gnu/packages/messaging.scm                         |  300 +++++-
 gnu/packages/microcom.scm                          |   57 ++
 gnu/packages/mpd.scm                               |   54 +-
 gnu/packages/music.scm                             |  218 ++++-
 gnu/packages/nano.scm                              |    5 +-
 gnu/packages/ncurses.scm                           |   48 +-
 gnu/packages/networking.scm                        |  119 ++-
 gnu/packages/nfs.scm                               |  118 +++
 gnu/packages/nickle.scm                            |   54 +
 gnu/packages/ocaml.scm                             |    2 +-
 gnu/packages/onc-rpc.scm                           |    2 +-
 gnu/packages/openstack.scm                         |   49 +
 gnu/packages/orpheus.scm                           |   75 +-
 gnu/packages/package-management.scm                |    4 +-
 gnu/packages/parallel.scm                          |    4 +-
 gnu/packages/password-utils.scm                    |   35 +
 gnu/packages/patches/azr3.patch                    |  151 +++
 .../patches/dtc-add-missing-symbols-to-lds.patch   |   59 --
 gnu/packages/patches/flashrom-use-libftdi1.patch   |   70 --
 gnu/packages/patches/gnupg-fix-expired-test.patch  |   78 ++
 .../gtk2-respect-GUIX_GTK2_IM_MODULE_FILE.patch    |   15 +
 .../gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch    |   15 +
 gnu/packages/patches/hydra-automake-1.15.patch     |   63 --
 .../patches/jbig2dec-ignore-testtest.patch         |   24 +-
 gnu/packages/patches/llvm-for-extempore.patch      |  118 +++
 .../{lua-pkgconfig.patch => lua51-pkgconfig.patch} |   96 +-
 .../patches/mupdf-build-with-openjpeg-2.1.patch    |   38 +
 gnu/packages/patches/mysql-fix-failing-test.patch  |   57 --
 .../patches/onionshare-fix-install-paths.patch     |   39 +
 gnu/packages/patches/openjpeg-CVE-2016-5157.patch  |   96 ++
 gnu/packages/patches/openjpeg-CVE-2016-7163.patch  |   71 ++
 ...sh-in.patch => openssl-1.1.0-c-rehash-in.patch} |   12 +-
 .../patches/p7zip-remove-unused-code.patch         |  959 ++++++++++++++++++
 gnu/packages/patches/plink-endian-detection.patch  |   30 +
 .../patches/python-django-fix-testcase.patch       |   42 +
 gnu/packages/patches/slock-CVE-2016-6866.patch     |   51 +
 gnu/packages/patches/steghide-fixes.patch          |   71 ++
 gnu/packages/patches/swish-e-format-security.patch |   33 +
 gnu/packages/patches/swish-e-search.patch          |   43 +
 gnu/packages/pdf.scm                               |   85 +-
 gnu/packages/perl.scm                              |  171 +++-
 gnu/packages/python.scm                            |  821 +++++++++++++++-
 gnu/packages/qemu.scm                              |    6 +-
 gnu/packages/qt.scm                                |   10 +
 gnu/packages/regex.scm                             |   32 +
 gnu/packages/ruby.scm                              |    3 +-
 gnu/packages/scheme.scm                            |   22 +-
 gnu/packages/screen.scm                            |    2 +
 gnu/packages/scribus.scm                           |    4 +-
 gnu/packages/sdcc.scm                              |   69 ++
 gnu/packages/search.scm                            |   94 +-
 gnu/packages/shells.scm                            |   23 +
 gnu/packages/shellutils.scm                        |   34 +
 gnu/packages/ssh.scm                               |    2 +-
 gnu/packages/statistics.scm                        |  507 ++++++++--
 gnu/packages/suckless.scm                          |    8 +-
 gnu/packages/tbb.scm                               |   75 +-
 gnu/packages/telephony.scm                         |   22 +-
 gnu/packages/terminals.scm                         |   86 +-
 gnu/packages/tex.scm                               |   43 +
 gnu/packages/texinfo.scm                           |   12 +
 gnu/packages/tls.scm                               |  129 ++-
 gnu/packages/tor.scm                               |  117 ++-
 gnu/packages/tre.scm                               |   57 --
 gnu/packages/u-boot.scm                            |   21 +-
 gnu/packages/version-control.scm                   |   48 +-
 gnu/packages/video.scm                             |   94 +-
 gnu/packages/vim.scm                               |   18 +-
 gnu/packages/web.scm                               |  252 ++++-
 gnu/packages/webkit.scm                            |    4 +-
 gnu/packages/wm.scm                                |   77 +-
 gnu/packages/xml.scm                               |  180 +++-
 gnu/packages/xorg.scm                              |   19 +
 gnu/packages/zip.scm                               |   11 +-
 gnu/services.scm                                   |   22 +-
 gnu/services/avahi.scm                             |    2 +-
 gnu/services/base.scm                              |  279 ++++--
 gnu/services/databases.scm                         |    4 +-
 gnu/services/dbus.scm                              |    4 +-
 gnu/services/desktop.scm                           |   11 +-
 gnu/services/dict.scm                              |    2 +-
 gnu/services/mail.scm                              |   14 +-
 gnu/services/networking.scm                        |   27 +-
 gnu/services/nfs.scm                               |   54 +
 gnu/services/sddm.scm                              |  318 ++++++
 gnu/services/spice.scm                             |    2 +-
 gnu/services/ssh.scm                               |  133 ++-
 gnu/services/web.scm                               |    6 +-
 gnu/services/xorg.scm                              |   13 +-
 gnu/system.scm                                     |   72 +-
 gnu/system/examples/lightweight-desktop.tmpl       |    2 +-
 gnu/system/file-systems.scm                        |    1 +
 gnu/system/grub.scm                                |   72 +-
 gnu/system/install.scm                             |   16 +-
 gnu/system/linux-initrd.scm                        |   25 +-
 gnu/system/mapped-devices.scm                      |    5 +-
 gnu/system/vm.scm                                  |   23 +-
 gnu/tests/base.scm                                 |    9 +-
 guix/build-system/python.scm                       |    2 +
 guix/build/ant-build-system.scm                    |    2 +-
 guix/build/syscalls.scm                            |  180 ++--
 guix/gexp.scm                                      |  131 ++-
 guix/gnupg.scm                                     |    4 +-
 guix/import/gem.scm                                |   13 +-
 guix/import/pypi.scm                               |   13 +-
 guix/import/utils.scm                              |  104 +-
 guix/licenses.scm                                  |   12 +-
 guix/modules.scm                                   |  155 +++
 guix/packages.scm                                  |   18 +-
 guix/profiles.scm                                  |  111 ++-
 guix/scripts/build.scm                             |   14 +-
 guix/scripts/hash.scm                              |   27 +-
 guix/scripts/import/gnu.scm                        |    6 +-
 guix/scripts/import/nix.scm                        |    4 +-
 guix/scripts/offload.scm                           |    4 +-
 guix/scripts/package.scm                           |  139 ++-
 guix/scripts/refresh.scm                           |    2 +-
 guix/scripts/substitute.scm                        |    2 +-
 guix/scripts/system.scm                            |    9 +-
 guix/ui.scm                                        |   12 +-
 tests/gexp.scm                                     |   53 +
 tests/guix-build.sh                                |    6 +
 tests/guix-hash.sh                                 |   16 +
 tests/import-utils.scm                             |    5 +
 tests/modules.scm                                  |   45 +
 tests/packages.scm                                 |   59 ++
 tests/profiles.scm                                 |    3 +
 207 files changed, 13581 insertions(+), 2283 deletions(-)
 create mode 100644 etc/completion/zsh/_guix
 create mode 100644 gnu/packages/django.scm
 create mode 100644 gnu/packages/gforth.scm
 create mode 100644 gnu/packages/gobby.scm
 create mode 100644 gnu/packages/lighting.scm
 create mode 100644 gnu/packages/microcom.scm
 create mode 100644 gnu/packages/nfs.scm
 create mode 100644 gnu/packages/nickle.scm
 create mode 100644 gnu/packages/patches/azr3.patch
 delete mode 100644 gnu/packages/patches/dtc-add-missing-symbols-to-lds.patch
 delete mode 100644 gnu/packages/patches/flashrom-use-libftdi1.patch
 create mode 100644 gnu/packages/patches/gnupg-fix-expired-test.patch
 create mode 100644 
gnu/packages/patches/gtk2-respect-GUIX_GTK2_IM_MODULE_FILE.patch
 create mode 100644 
gnu/packages/patches/gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch
 delete mode 100644 gnu/packages/patches/hydra-automake-1.15.patch
 create mode 100644 gnu/packages/patches/llvm-for-extempore.patch
 copy gnu/packages/patches/{lua-pkgconfig.patch => lua51-pkgconfig.patch} (58%)
 create mode 100644 gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch
 delete mode 100644 gnu/packages/patches/mysql-fix-failing-test.patch
 create mode 100644 gnu/packages/patches/onionshare-fix-install-paths.patch
 create mode 100644 gnu/packages/patches/openjpeg-CVE-2016-5157.patch
 create mode 100644 gnu/packages/patches/openjpeg-CVE-2016-7163.patch
 copy gnu/packages/patches/{openssl-c-rehash-in.patch => 
openssl-1.1.0-c-rehash-in.patch} (59%)
 create mode 100644 gnu/packages/patches/p7zip-remove-unused-code.patch
 create mode 100644 gnu/packages/patches/plink-endian-detection.patch
 create mode 100644 gnu/packages/patches/python-django-fix-testcase.patch
 create mode 100644 gnu/packages/patches/slock-CVE-2016-6866.patch
 create mode 100644 gnu/packages/patches/steghide-fixes.patch
 create mode 100644 gnu/packages/patches/swish-e-format-security.patch
 create mode 100644 gnu/packages/patches/swish-e-search.patch
 create mode 100644 gnu/packages/sdcc.scm
 delete mode 100644 gnu/packages/tre.scm
 create mode 100644 gnu/services/nfs.scm
 create mode 100644 gnu/services/sddm.scm
 create mode 100644 guix/modules.scm
 create mode 100644 tests/modules.scm



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