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01/01: Merge branch 'master' into python-tests


From: Leo Famulari
Subject: 01/01: Merge branch 'master' into python-tests
Date: Fri, 13 Jan 2017 15:22:43 +0000 (UTC)

lfam pushed a commit to branch python-tests
in repository guix.

commit cc0725914e74c4c4dec369f3e7cdb6f201b3fecd
Merge: a25b688 ce195ba
Author: Leo Famulari <address@hidden>
Date:   Fri Jan 13 10:21:17 2017 -0500

    Merge branch 'master' into python-tests

 .gitignore                                         |    1 +
 .mailmap                                           |   23 +-
 HACKING                                            |    5 +
 Makefile.am                                        |   33 +-
 NEWS                                               |  478 +
 build-aux/check-final-inputs-self-contained.scm    |    7 +-
 build-aux/hydra/demo-os.scm                        |   84 -
 build-aux/hydra/gnu-system.scm                     |   15 +-
 configure.ac                                       |   22 +-
 d3.v3.js                                           | 9584 ++++++++++++++++++++
 doc/contributing.texi                              |   28 +-
 doc/emacs.texi                                     |  881 --
 doc/guix.texi                                      |  799 +-
 doc/htmlxref.cnf                                   |    2 +
 doc/images/bootstrap-packages.dot                  |  210 +-
 doc/images/coreutils-bag-graph.dot                 |  424 +-
 doc/images/coreutils-graph.dot                     |   44 +-
 doc/images/shepherd-graph.dot                      |   86 +-
 doc/local.mk                                       |    3 +-
 emacs/guix-about.el                                |   37 -
 emacs/guix-backend.el                              |  393 -
 emacs/guix-base.el                                 |  377 -
 emacs/guix-buffer.el                               |  624 --
 emacs/guix-build-log.el                            |  381 -
 emacs/guix-command.el                              |  830 --
 emacs/guix-config.el.in                            |   44 -
 emacs/guix-devel.el                                |  382 -
 emacs/guix-entry.el                                |   59 -
 emacs/guix-external.el                             |   88 -
 emacs/guix-geiser.el                               |  126 -
 emacs/guix-guile.el                                |   98 -
 emacs/guix-help-vars.el                            |  108 -
 emacs/guix-helper.scm.in                           |   65 -
 emacs/guix-history.el                              |   92 -
 emacs/guix-hydra-build.el                          |  362 -
 emacs/guix-hydra-jobset.el                         |  162 -
 emacs/guix-hydra.el                                |  367 -
 emacs/guix-info.el                                 |  482 -
 emacs/guix-init.el                                 |    3 -
 emacs/guix-license.el                              |   65 -
 emacs/guix-list.el                                 |  585 --
 emacs/guix-location.el                             |   79 -
 emacs/guix-main.scm                                | 1163 ---
 emacs/guix-messages.el                             |  247 -
 emacs/guix-pcomplete.el                            |  370 -
 emacs/guix-popup.el                                |   48 -
 emacs/guix-prettify.el                             |  210 -
 emacs/guix-profiles.el                             |   77 -
 emacs/guix-read.el                                 |  147 -
 emacs/guix-ui-generation.el                        |  456 -
 emacs/guix-ui-license.el                           |  150 -
 emacs/guix-ui-location.el                          |   83 -
 emacs/guix-ui-package.el                           | 1191 ---
 emacs/guix-ui-system-generation.el                 |  105 -
 emacs/guix-ui.el                                   |  323 -
 emacs/guix-utils.el                                |  609 --
 emacs/local.mk                                     |   77 -
 etc/git/pre-push                                   |   57 +
 etc/indent-package.el.in                           |   53 +
 gnu/build/file-systems.scm                         |  318 +-
 gnu/local.mk                                       |   46 +-
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 gnu/packages/admin.scm                             |   18 +-
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 gnu/packages/aspell.scm                            |   40 +-
 gnu/packages/audio.scm                             |   15 +-
 gnu/packages/backup.scm                            |   78 +-
 gnu/packages/base.scm                              |    9 +-
 gnu/packages/bioinformatics.scm                    |  278 +-
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 gnu/packages/boost.scm                             |    2 +-
 gnu/packages/bootstrap.scm                         |    4 +-
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 gnu/packages/cdrom.scm                             |  101 +
 gnu/packages/check.scm                             |    4 +-
 gnu/packages/ci.scm                                |   31 +-
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 gnu/packages/commencement.scm                      |    5 +-
 gnu/packages/compression.scm                       |    6 +-
 gnu/packages/connman.scm                           |   49 +-
 gnu/packages/cross-base.scm                        |    2 +-
 gnu/packages/cups.scm                              |   16 +-
 gnu/packages/curl.scm                              |   10 +-
 gnu/packages/databases.scm                         |    8 +-
 gnu/packages/dav.scm                               |    4 +-
 gnu/packages/disk.scm                              |   36 +
 gnu/packages/display-managers.scm                  |    2 +-
 gnu/packages/dns.scm                               |   28 +-
 gnu/packages/ebook.scm                             |    6 +-
 gnu/packages/emacs.scm                             |  123 +-
 gnu/packages/embedded.scm                          |  352 +-
 gnu/packages/engineering.scm                       |   13 +-
 gnu/packages/enlightenment.scm                     |    4 +-
 gnu/packages/fonts.scm                             |  159 +-
 gnu/packages/fpga.scm                              |   18 +-
 gnu/packages/freedesktop.scm                       |   85 +-
 gnu/packages/game-development.scm                  |    4 +-
 gnu/packages/games.scm                             |   18 +-
 gnu/packages/gcc.scm                               |   13 +-
 gnu/packages/ghostscript.scm                       |    2 +-
 gnu/packages/gimp.scm                              |    2 +
 gnu/packages/gl.scm                                |    4 +
 gnu/packages/gnome.scm                             |   54 +-
 gnu/packages/gnucash.scm                           |   10 +-
 gnu/packages/gnunet.scm                            |   35 +-
 gnu/packages/gnupg.scm                             |  137 +-
 gnu/packages/gnuzilla.scm                          |   69 +-
 gnu/packages/graphviz.scm                          |   50 +-
 gnu/packages/groff.scm                             |   41 +
 gnu/packages/grub.scm                              |   61 +-
 gnu/packages/gtk.scm                               |   52 +-
 gnu/packages/guile.scm                             |  183 +-
 gnu/packages/gv.scm                                |   23 +-
 gnu/packages/haskell.scm                           |  243 +-
 gnu/packages/hurd.scm                              |   19 +-
 gnu/packages/idris.scm                             |  256 +
 gnu/packages/image-viewers.scm                     |    5 +-
 gnu/packages/image.scm                             |  106 +-
 gnu/packages/imagemagick.scm                       |    7 +-
 gnu/packages/inkscape.scm                          |   32 +-
 gnu/packages/irc.scm                               |   20 +-
 gnu/packages/java.scm                              |   44 +-
 gnu/packages/kde-frameworks.scm                    |   40 +-
 gnu/packages/kde.scm                               |  175 +-
 gnu/packages/libreoffice.scm                       |   26 +-
 gnu/packages/libupnp.scm                           |    3 +-
 ...bre-4.8-i686.conf => linux-libre-4.9-i686.conf} |  208 +-
 ...4.8-x86_64.conf => linux-libre-4.9-x86_64.conf} |  216 +-
 gnu/packages/linux.scm                             |  272 +-
 gnu/packages/lisp.scm                              |   42 +-
 gnu/packages/llvm.scm                              |    6 +-
 gnu/packages/lynx.scm                              |    4 +-
 gnu/packages/mail.scm                              |  170 +-
 gnu/packages/make-bootstrap.scm                    |    4 -
 gnu/packages/man.scm                               |    4 +-
 gnu/packages/maths.scm                             |   83 +-
 gnu/packages/mc.scm                                |   14 +-
 gnu/packages/messaging.scm                         |  129 +-
 gnu/packages/monitoring.scm                        |   15 +-
 gnu/packages/moreutils.scm                         |   60 +-
 gnu/packages/mp3.scm                               |    6 +-
 gnu/packages/mpd.scm                               |   15 +-
 gnu/packages/mtools.scm                            |    3 +-
 gnu/packages/music.scm                             |   70 +-
 gnu/packages/nano.scm                              |    4 +-
 gnu/packages/networking.scm                        |   50 +-
 gnu/packages/nim.scm                               |   59 +
 gnu/packages/ocaml.scm                             |  685 +-
 gnu/packages/onc-rpc.scm                           |    2 +-
 gnu/packages/package-management.scm                |   49 +-
 gnu/packages/parallel.scm                          |    4 +-
 gnu/packages/password-utils.scm                    |   34 +-
 .../patches/awesome-reproducible-png.patch         |    4 +-
 .../chicken-CVE-2016-6830+CVE-2016-6831.patch      |   81 +
 .../patches/cracklib-fix-buffer-overflow.patch     |   39 +
 .../gnupg-test-segfault-on-32bit-arch.patch        |   40 +
 .../patches/inkscape-drop-wait-for-targets.patch   |   68 -
 .../patches/kdbusaddons-kinit-file-name.patch      |   15 +
 .../patches/khal-disable-failing-tests.patch       |   33 +
 gnu/packages/patches/libpng-CVE-2016-10087.patch   |   37 +
 gnu/packages/patches/libtiff-CVE-2016-10092.patch  |   42 +
 gnu/packages/patches/libtiff-CVE-2016-10093.patch  |   53 +
 gnu/packages/patches/libtiff-CVE-2016-10094.patch  |   34 +
 .../patches/libtiff-assertion-failure.patch        |   60 +
 .../patches/libtiff-divide-by-zero-ojpeg.patch     |   63 +
 .../patches/libtiff-divide-by-zero-tiffcp.patch    |  104 +
 .../patches/libtiff-divide-by-zero-tiffcrop.patch  |   57 +
 gnu/packages/patches/libtiff-divide-by-zero.patch  |   67 +
 .../libtiff-heap-overflow-pixarlog-luv.patch       |  131 +
 .../libtiff-heap-overflow-tif-dirread.patch        |  132 +
 .../patches/libtiff-heap-overflow-tiffcp.patch     |   67 +
 .../patches/libtiff-heap-overflow-tiffcrop.patch   |   60 +
 gnu/packages/patches/libtiff-invalid-read.patch    |   64 +
 .../patches/libtiff-null-dereference.patch         |   42 +
 .../patches/libtiff-tiffcp-underflow.patch         |   41 +
 gnu/packages/patches/libupnp-CVE-2016-8863.patch   |   72 +
 gnu/packages/patches/libxml2-CVE-2016-4658.patch   |  257 +
 gnu/packages/patches/libxml2-CVE-2016-5131.patch   |  218 +
 gnu/packages/patches/libxt-guix-search-paths.patch |  126 +
 gnu/packages/patches/mcrypt-CVE-2012-4409.patch    |   35 +-
 gnu/packages/patches/mcrypt-CVE-2012-4527.patch    |  198 +-
 .../patches/multiqc-fix-git-subprocess-error.patch |   16 +
 .../patches/ocaml-Add-a-.file-directive.patch      |   96 +
 ...ml-bisect-fix-camlp4-in-another-directory.patch |  125 +
 .../patches/ocaml-bitstring-fix-configure.patch    |   53 +
 .../patches/openssh-memory-exhaustion.patch        |   39 -
 .../python-dendropy-exclude-failing-tests.patch    |   21 -
 .../patches/python-pycrypto-CVE-2013-7459.patch    |   97 +
 .../python-pygpgme-fix-pinentry-tests.patch        |   69 +
 gnu/packages/patches/qemu-CVE-2016-8576.patch      |   62 -
 gnu/packages/patches/qemu-CVE-2016-8577.patch      |   36 -
 gnu/packages/patches/qemu-CVE-2016-8578.patch      |   27 -
 .../ruby-yard-fix-skip-of-markdown-tests.patch     |   17 -
 gnu/packages/patches/slock-CVE-2016-6866.patch     |   51 -
 gnu/packages/patches/unrtf-CVE-2016-10091.patch    |  189 +
 gnu/packages/pdf.scm                               |    9 +-
 gnu/packages/perl.scm                              |   46 +-
 gnu/packages/python.scm                            |  737 +-
 gnu/packages/qemu.scm                              |   18 +-
 gnu/packages/qt.scm                                |  352 +-
 gnu/packages/ruby.scm                              |   84 +-
 gnu/packages/rust.scm                              |  332 +
 gnu/packages/samba.scm                             |    4 +-
 gnu/packages/scanner.scm                           |   64 +-
 gnu/packages/scheme.scm                            |   31 +-
 gnu/packages/sdl.scm                               |   15 +-
 gnu/packages/search.scm                            |    4 +-
 gnu/packages/security-token.scm                    |    6 +-
 gnu/packages/serialization.scm                     |    4 +-
 gnu/packages/shells.scm                            |   13 +-
 gnu/packages/shellutils.scm                        |    6 +-
 gnu/packages/speech.scm                            |   34 +
 gnu/packages/ssh.scm                               |    5 +-
 gnu/packages/statistics.scm                        |  403 +-
 gnu/packages/suckless.scm                          |   30 +-
 gnu/packages/sync.scm                              |    4 +-
 gnu/packages/telephony.scm                         |    4 +-
 gnu/packages/terminals.scm                         |   42 +-
 gnu/packages/tls.scm                               |   24 +-
 gnu/packages/tor.scm                               |   14 +-
 gnu/packages/unrtf.scm                             |    2 +
 gnu/packages/upnp.scm                              |   11 +-
 gnu/packages/version-control.scm                   |    6 +-
 gnu/packages/video.scm                             |   30 +-
 gnu/packages/vim.scm                               |    4 +-
 gnu/packages/vpn.scm                               |   10 +-
 gnu/packages/web.scm                               |   50 +-
 gnu/packages/wm.scm                                |   12 +-
 gnu/packages/xdisorg.scm                           |   14 +-
 gnu/packages/xfig.scm                              |  155 +-
 gnu/packages/xml.scm                               |   10 +
 gnu/packages/xorg.scm                              |  160 +-
 gnu/packages/zile.scm                              |   82 +-
 gnu/packages/zip.scm                               |    4 +-
 gnu/services/admin.scm                             |    7 +-
 gnu/services/avahi.scm                             |    2 +-
 gnu/services/base.scm                              |   46 +-
 gnu/services/configuration.scm                     |    3 +
 gnu/services/cuirass.scm                           |   60 +-
 gnu/services/databases.scm                         |  116 +-
 gnu/services/desktop.scm                           |    5 +
 gnu/services/messaging.scm                         |  726 ++
 gnu/services/networking.scm                        |    9 +-
 gnu/services/sddm.scm                              |    2 +-
 gnu/services/shepherd.scm                          |    2 +-
 gnu/services/web.scm                               |   96 +-
 gnu/system/grub.scm                                |   17 +-
 gnu/system/install.scm                             |    8 +-
 gnu/system/linux-initrd.scm                        |   15 +
 gnu/tests/install.scm                              |   77 +-
 gnu/tests/nfs.scm                                  |  131 +
 graph.js                                           |  129 +
 guix/build-system/cargo.scm                        |  149 +
 guix/build-system/ocaml.scm                        |  181 +
 guix/build/cargo-build-system.scm                  |  110 +
 guix/build/download.scm                            |    9 +-
 guix/build/make-bootstrap.scm                      |    5 +-
 guix/build/ocaml-build-system.scm                  |  119 +
 guix/build/syscalls.scm                            |    6 +-
 guix/derivations.scm                               |   58 +-
 guix/docker.scm                                    |  127 +
 guix/gexp.scm                                      |   53 +-
 guix/git-download.scm                              |   33 +-
 guix/gnu-maintenance.scm                           |    8 +-
 guix/grafts.scm                                    |   90 +-
 guix/graph.scm                                     |   79 +-
 guix/http-client.scm                               |    7 +-
 guix/import/cran.scm                               |  215 +-
 guix/import/crate.scm                              |  165 +
 guix/import/elpa.scm                               |   10 +-
 guix/import/github.scm                             |   15 +-
 guix/import/pypi.scm                               |    3 +-
 guix/import/utils.scm                              |   36 +
 guix/profiles.scm                                  |   24 +-
 guix/scripts/archive.scm                           |   36 +-
 guix/scripts/build.scm                             |    6 +-
 guix/scripts/challenge.scm                         |    2 +-
 guix/scripts/copy.scm                              |  207 +
 guix/scripts/environment.scm                       |   37 +-
 guix/scripts/graph.scm                             |   57 +-
 guix/scripts/hash.scm                              |    5 +-
 guix/scripts/import.scm                            |   21 +-
 guix/scripts/import/cran.scm                       |   26 +-
 guix/scripts/import/{cran.scm => crate.scm}        |   30 +-
 guix/scripts/offload.scm                           |  154 +-
 guix/scripts/package.scm                           |   10 +-
 guix/scripts/perform-download.scm                  |   37 +-
 guix/scripts/refresh.scm                           |    3 +-
 guix/ssh.scm                                       |  226 +
 guix/ui.scm                                        |   10 +-
 guix/upstream.scm                                  |    8 +-
 guix/utils.scm                                     |   10 +-
 nix/libstore/build.cc                              |   28 +-
 nix/libstore/builtins.cc                           |   10 +-
 nix/libstore/builtins.hh                           |    5 +-
 nix/local.mk                                       |   24 +-
 po/guix/POTFILES.in                                |    1 +
 po/guix/da.po                                      | 1023 ++-
 po/guix/fr.po                                      |  920 +-
 po/guix/pt_BR.po                                   |  929 +-
 po/packages/da.po                                  | 6316 ++++++++-----
 tests/cpan.scm                                     |   73 +-
 tests/crate.scm                                    |  103 +
 tests/derivations.scm                              |   27 +-
 tests/gem.scm                                      |   10 +-
 tests/gexp.scm                                     |   23 +-
 tests/graph.scm                                    |   17 +-
 tests/guix-environment.sh                          |   17 +-
 tests/guix-package.sh                              |   10 +-
 tests/packages.scm                                 |    3 +-
 tests/profiles.scm                                 |   18 +-
 tests/pypi.scm                                     |  159 +-
 tests/scripts-build.scm                            |   13 +
 315 files changed, 30283 insertions(+), 19060 deletions(-)

diff --cc gnu/local.mk
index 89d1e83,21580a3..2f852b5
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@@ -815,11 -845,9 +845,10 @@@ dist_patch_DATA =                                
                
    %D%/packages/patches/python-configobj-setuptools.patch      \
    %D%/packages/patches/python-paste-remove-website-test.patch \
    %D%/packages/patches/python-paste-remove-timing-test.patch  \
 +  %D%/packages/patches/python-pyopenssl-skip-network-test.patch       \
+   %D%/packages/patches/python-pycrypto-CVE-2013-7459.patch    \
    %D%/packages/patches/python2-pygobject-2-gi-info-type-error-domain.patch \
-   %D%/packages/patches/qemu-CVE-2016-8576.patch                       \
-   %D%/packages/patches/qemu-CVE-2016-8577.patch                       \
-   %D%/packages/patches/qemu-CVE-2016-8578.patch                       \
+   %D%/packages/patches/python-pygpgme-fix-pinentry-tests.patch        \
    %D%/packages/patches/qt4-ldflags.patch                      \
    %D%/packages/patches/quickswitch-fix-dmenu-check.patch      \
    %D%/packages/patches/rapicorn-isnan.patch                   \
diff --cc gnu/packages/python.scm
index 9388534,727e1bf..bfd003b
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@@ -2805,11 -2891,8 +2928,11 @@@ reStructuredText."
         (uri (pypi-uri "Pygments" version))
         (sha256
          (base32
-          "0lagrwifsgn0s8bzqahpr87p7gd38xja8f06akscinp6hj89283k"))))
+          "10axnp2wpjnq9g8wg53fx0c70dfxqrz498jyz8mrdx9a3flwir48"))))
      (build-system python-build-system)
 +    (arguments
 +     ;; FIXME: Tests require sphinx, which depends on this.
 +     '(#:tests? #f))
      (home-page "http://pygments.org/";)
      (synopsis "Syntax highlighting")
      (description
@@@ -8174,10 -8230,10 +8421,10 @@@ processes across test runs."
               (uri (pypi-uri "icalendar" version))
               (sha256
                (base32
-                "01v2f3swd5s72x65cdihw83dx1z799b4i49a6ncg7vqmcm20wapd"))))
+                "1bvi7rzh7scl4nmgj2n2cy7k0v3p29y15cqy2hcdnfq9mnhdr63y"))))
      (build-system python-build-system)
      (propagated-inputs
 -     `(("python-dateutil-2" ,python-dateutil-2)
 +     `(("python-dateutil" ,python-dateutil)
         ("python-pytz" ,python-pytz)))
      (synopsis "Python library for parsing iCalendar files")
      (description "The icalendar package is a parser/generator of iCalendar



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