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branch core-updates updated (f3a79f8 -> 20c1b4b)


From: Ludovic Courtès
Subject: branch core-updates updated (f3a79f8 -> 20c1b4b)
Date: Fri, 10 Feb 2017 12:08:11 -0500 (EST)

civodul pushed a change to branch core-updates
in repository guix.

      from  f3a79f8   gnu: grep: Update to 3.0.
       new  955ba55   gnu: avahi: Add dependency on libcap.
      adds  feeeee2   gnu: gst-plugins-base: Fix build on 32bit.
      adds  0f31d4f   gnu: guile-json: Texinfoify description.
      adds  d2a5e69   file-systems: Add 'file-system-mapping->bind-mount'.
      adds  2d1ac1d   gnu: thefuck: Fix execution.
      adds  345504c   gnu: Add no-more-secrets.
      adds  942f38e   gnu: address@hidden: Update to 4.4.46.
      adds  883aab6   gnu: linux-libre: Update to 4.9.7.
      adds  89eb56f   gnu: fish: Update to 2.5.0.
      adds  effd719   gnu: zpaq: Tune for 'generic-armv7-a' on armhf.
      adds  f2de078   gnu: git: Update to 2.11.1.
      adds  3733769   gnu: Add r-randomforest.
      adds  c6dced8   gnu: Add r-rann.
      adds  efc12a8   gnu: abbaye: Update to 2.0.1.
      adds  3e9750c   gnu: Add emacs-mew.
      adds  b352b57   gnu: qemu: Patch CVE-2017-{2615, 5578, 5579, 5856}.
      adds  1ac675a   gnu: p7zip: Fix CVE-2016-9256.
      adds  dfb493c   gnu: abcde: Update to 2.8.1.
      adds  33f7b5d   gnu: vim: Update to 8.0.0300.
      adds  cf98d34   activation: Set the right owner for home directories.
      adds  ad167d0   file-systems: Remove dependency on (guix store).
      adds  182dde8   gnu: cddlib: Fix source URI.
      adds  38eefbb   gnu: wget: Update to 1.19.
      adds  744dcb4   gnu: redshift: Remove uneeded input.
      adds  706998e   gnu: xscreensaver: Update license URI.
      adds  1ae60db   gnu: Add python-lz4.
      adds  1a0a550   gnu: Add python-lzo.
      adds  d160698   gnu: youtube-dl: Update to 2017.02.01
      adds  f719fe5   gnu: address@hidden: Update to 4.4.47.
      adds  2b742c2   gnu: linux-libre: Update to 4.9.8.
      adds  0418ff7   gnu: libidn2: Update to 0.16.
      adds  dd2c73f   gnu: wget: Use libidn2.
      adds  2d92eca   gnu: imagemagick: Update to 6.9.7-7.
      adds  40c4e3b   gnu: u-boot: Use scandir.
      adds  15308f6   gnu: u-boot: Update to 2017.01.
      adds  e69dc54   gnu: xonsh: Update to 0.5.3.
      adds  168aba2   linux-container: Do not rely on 'isatty?'.
      adds  36c4917   linux-container: Add comment on exception handling.
      adds  1ca0f20   config-daemon.ac: detect host AR
      adds  cc1c397   gnu: Add re2c.
      adds  416c57f   gnu: ddrescue: Update to 1.22.
      adds  6edc157   gnu: tcpdump: Fetch source from tcpdump.org.
      adds  686d425   gnu: certbot, python-acme: Update to 0.11.1.
      adds  d846834   gnu: grub: Update to 2.02rc1.
      adds  5f0f368   gnu: dosfstools: Update to 4.1.
      adds  a24fda8   gnu: bdb: Correct license.
      adds  7597478   file-systems: Add '%network-configuration-files' and 
'%network-file-mappings'.
      adds  3454f7e   bash completion: Complete 'guix gc' with file names.
      adds  e109ed3   bash completion: Complete file names after 'guix system 
COMMAND'.
      adds  a93c1c5   bash completion: Properly complete 'guix container exec'.
      adds  f2c66fb   bash completion: Complete subcommands for the current 
word.
      adds  b9a5efa   services: bitlbee: Read the PID file.
      adds  c90db25   linux-container: Add 'container-excursion*'.
      adds  63302a4   Add (gnu build shepherd).
      adds  a062b6c   services: bitlbee: Run in a container.
      adds  6f48d9d   gnu: epiphany: Update to 3.22.6 [security update].
      adds  ef753a1   gnu: grub-efi: Really build the EFI variant.
      adds  328f7cb   daemon: Define 'NIX_STORE' before invoking 'guix 
perform-download'.
      adds  d480ed7   build: Warn about lack of substitutes for non-standard 
stores.
      adds  189d842   gnu: Add lshw.
      adds  33a8687   gnu: mcelog: Update to 148.
      adds  4dcb3db   gnu: fonts: Use install-file where appropriate.
      adds  22a7abf   gnu: youtube-dl: Update to 2017.02.07.
      adds  98d403b   gnu: Add python-pyodbc-c.
      adds  4621acf   gnu: r: Build default packages reproducibly.
      adds  f0d0c5b   etc: The pre-push hook says which commits failed the 
signature check.
      adds  6bd9ad6   gnu: python-dateutil-2: Update to 2.5.3.
      adds  06d7d11   profiles: gtk-im-modules: Fix for gtk3.
      adds  618739b   gnu: nix: Update to 1.11.6.
      adds  387e175   services: Add 'special-files-service-type'.
      adds  750a423   services: shepherd: Replace spaces with hyphens in file 
names.
      adds  4eaac4b   import: pypi: Correctly handle multiple-URL origins.
      adds  2149d3e   gnu: Add freerdp.
      adds  cce0da5   gnu: Add vinagre.
      adds  bafd5be   gnu: bind: Update to 9.10.4-P6.
      adds  507809b   gnu: weechat: Make sure it finds the correct python.
      adds  77e5219   gnu: rocksdb: Update to 5.1.2.
      adds  06a035d   gnu: databases.scm: Sort package imports.
      adds  ba8b9f8   gnu: databases.scm: Use license: prefix.
      adds  3548b83   gnu: isc-dhcp: Update bundled bind to 9.9.9-P6.
      adds  f4b7cb8   gnu: ffmpeg: Update to 3.2.3.
      adds  98c8b96   gnu: mpv: Disable build date.
      adds  c8916c3   gnu: bash-minimal: Assume getcwd works correctly when 
cross-compiling
      adds  206af46   gnu: vsearch: Update to 2.4.0.
      adds  6506490   gnu: libvpx: Update to 1.6.1.
      adds  233a0c9   gnu: lua: Update to 5.3.4.
      adds  e0c752f   gnu: xf86-input-libinput: Update to 0.24.0.
      adds  3a44c7b   gnu: Add libmp4v2.
      adds  1ad3c7f   gnu: Add tidy-html.
      adds  a4f05b4   gnu: Add libsmf.
      adds  b0a2add   gnu: libextractor: Add dependencies.
      adds  ff71196   gnu: libextractor: Move .a files to output "static".
      adds  4554813   gnu: gmsh: Propagate opencascade-oce.
      adds  81e0bc1   import: json: Explicitly ask for JSON data.
      adds  bc5844d   import: Add stackage importer and updater.
      adds  a4824c6   import: hackage: Handle unknown packages gracefully.
      adds  6554be6   git-download: Add 'git-predicate'.
      adds  890795c   gnu: vte-ng: Update to 0.46.1.a.
      adds  c09fbf2   gnu: xf86-video-intel: Update to 2.99.917-3-e4fe79c.
      adds  1a917fc   gnu: Add python-rst2ansi.
      adds  1f42d82   gnu: Add python-flake8-polyfill.
      adds  2f4623d   gnu: Add python-ddt.
      adds  2299b13   gnu: Add python-pycosat.
      adds  8fd6850   gnu: Add python2-ruamel.ordereddict.
      adds  dc70109   gnu: emacs: Adjust 'tramp-remote-path' for remote GuixSD 
machines.
      adds  c7adafa   gnu: Add tlp.
      adds  69ff179   gnu: address@hidden: Update to 4.4.48.
      adds  76e62ef   gnu: linux-libre: Use %linux-libre-{version,hash} in 
package definition.
      adds  b2b02ba   gnu: linux-libre: Update to 4.9.9.
      adds  1a82ba6   gnu: ntfs-3g: Fix CVE-2017-0358.
      adds  beffaf9   gnu: ldc: Rename ldc 0.17.2 to ldc-bootstrap.
      adds  836cbd9   gnu: ldc: Update to 1.1.0.
      adds  fa73a7c   gnu: rustc: Add native-search-paths.
      adds  f23052a   gnu: mutter: Update to HEAD.
      adds  53ff549   gnu: Add git-crypt.
      adds  7b83b69   gnu: Add appstream-glib.
      adds  6c4f702   gnu: Add gnome-disk-utility.
      adds  72524ae   system: install: Add gptfdisk to installation os.
      adds  82de265   gnu: git: Add GIT_EXEC_PATH search-path-specification.
      adds  01ceca2   build: Add build-aux/ar-lib to .gitignore.
      adds  5533071   gnu: rdmd: Update to 2.073.0.
      adds  65e862d   gnu: Add dub-build-system.
      adds  5c2af89   gnu: lvm2: Update to 2.02.168.
      adds  d0d8784   gnu: webkitgtk: Update to 2.14.4 [security fixes].
      adds  afd5323   gnu: bash: Update patch URL to 4.4.
      adds  50b8a52   gnu: bash: Add graft for patch #7 [fixes CVE-2017-5932].
      adds  29da157   gnu: wxmaxima: Update to 16.12.2.
      adds  3f73aa1   gnu: Use 'license:' prefix in (gnu packages grub).
      adds  96b714f   gnu: Add syslinux.
      adds  862e38d   gnu: Move (gnu packages grub) and (gnu packages u-boot) 
...      to (gnu packages bootloaders).
      adds  ce03b45   gnu: Use 'license:' prefix in (gnu packages firmware).
      adds  1b533ba   gnu: Add seabios.
      adds  a5bc3df   gnu: Add ovmf.
      adds  446e1d5   gnu: Add font-comic-neue.
      adds  de191ca   gnu: Add font-iosevka.
      adds  49dbae5   gnu: Add font-go.
       new  768f0ac   Merge branch 'master' into core-updates
       new  20c1b4b   gnu: bash: Remove graft for CVE-2017-5932.

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                                         |   1 +
 Makefile.am                                        |   4 +
 config-daemon.ac                                   |   1 +
 configure.ac                                       |   9 +
 doc/guix.texi                                      |  87 +++++-
 etc/completion/bash/guix                           |  24 +-
 etc/git/pre-push                                   |  22 +-
 gnu/build/activation.scm                           |  49 ++-
 gnu/build/linux-container.scm                      |  40 ++-
 gnu/build/shepherd.scm                             | 177 +++++++++++
 gnu/local.mk                                       |  14 +-
 gnu/packages/admin.scm                             |  20 +-
 gnu/packages/avahi.scm                             |   4 +-
 gnu/packages/bash.scm                              |   5 +-
 gnu/packages/bioinformatics.scm                    |  29 +-
 gnu/packages/bootloaders.scm                       | 332 +++++++++++++++++++++
 gnu/packages/cdrom.scm                             |   6 +-
 gnu/packages/compression.scm                       |  76 ++++-
 gnu/packages/databases.scm                         | 106 ++++---
 gnu/packages/disk.scm                              |  18 +-
 gnu/packages/dns.scm                               |   4 +-
 gnu/packages/emacs.scm                             |  13 +-
 gnu/packages/firmware.scm                          | 136 ++++++++-
 gnu/packages/fonts.scm                             | 122 +++++++-
 gnu/packages/games.scm                             |  70 +++--
 gnu/packages/glib.scm                              |  46 ++-
 gnu/packages/gnome.scm                             | 118 +++++++-
 gnu/packages/gnunet.scm                            |  36 ++-
 gnu/packages/grub.scm                              | 161 ----------
 gnu/packages/gstreamer.scm                         |   4 +-
 gnu/packages/guile.scm                             |  15 +-
 gnu/packages/imagemagick.scm                       |   4 +-
 gnu/packages/irc.scm                               |  16 +-
 gnu/packages/ldc.scm                               |  89 +++---
 gnu/packages/libidn.scm                            |   7 +-
 gnu/packages/linux.scm                             | 151 +++++++++-
 gnu/packages/lua.scm                               |   4 +-
 gnu/packages/mail.scm                              |  53 ++++
 gnu/packages/maths.scm                             |  17 +-
 gnu/packages/music.scm                             |  49 +++
 gnu/packages/package-management.scm                |  41 +--
 .../gst-plugins-base-fix-test-on-32bit.patch       |  32 ++
 gnu/packages/patches/libvpx-CVE-2016-2818.patch    |  21 +-
 gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch   |  42 +++
 gnu/packages/patches/p7zip-CVE-2016-9296.patch     |  24 ++
 gnu/packages/patches/qemu-CVE-2017-2615.patch      |  52 ++++
 gnu/packages/patches/qemu-CVE-2017-5578.patch      |  39 +++
 gnu/packages/patches/qemu-CVE-2017-5579.patch      |  44 +++
 gnu/packages/patches/qemu-CVE-2017-5856.patch      |  68 +++++
 .../patches/vsearch-unbundle-cityhash.patch        |  73 +++++
 gnu/packages/python.scm                            | 137 ++++++++-
 gnu/packages/qemu.scm                              |   6 +-
 gnu/packages/rdesktop.scm                          |  73 ++++-
 gnu/packages/{cpio.scm => re2c.scm}                |  38 ++-
 gnu/packages/rust.scm                              |   3 +
 gnu/packages/shells.scm                            |  20 +-
 gnu/packages/statistics.scm                        |  58 +++-
 gnu/packages/tls.scm                               |  11 +-
 gnu/packages/u-boot.scm                            | 137 ---------
 gnu/packages/version-control.scm                   |  63 +++-
 gnu/packages/video.scm                             |  79 ++++-
 gnu/packages/vim.scm                               |   4 +-
 gnu/packages/web.scm                               |  50 +++-
 gnu/packages/webkit.scm                            |   4 +-
 gnu/packages/wget.scm                              |   8 +-
 gnu/packages/xdisorg.scm                           |   3 +-
 gnu/packages/xorg.scm                              |  10 +-
 gnu/services.scm                                   |  25 +-
 gnu/services/base.scm                              |   7 +-
 gnu/services/networking.scm                        |  31 +-
 gnu/services/shepherd.scm                          |   2 +
 gnu/system/file-systems.scm                        |  56 +++-
 gnu/system/grub.scm                                |   4 +-
 gnu/system/install.scm                             |   4 +-
 gnu/system/linux-container.scm                     |  21 +-
 gnu/system/vm.scm                                  |   2 +-
 gnu/tests/base.scm                                 |  53 +++-
 guix/build-system/{cargo.scm => dub.scm}           |  78 +++--
 guix/build/dub-build-system.scm                    | 125 ++++++++
 guix/git-download.scm                              |  43 ++-
 guix/import/hackage.scm                            |  24 +-
 guix/import/json.scm                               |   3 +-
 guix/import/pypi.scm                               |  13 +-
 guix/import/stackage.scm                           | 135 +++++++++
 guix/profiles.scm                                  |  26 +-
 guix/scripts/environment.scm                       |  26 +-
 guix/scripts/import.scm                            |   3 +-
 guix/scripts/import/{cran.scm => stackage.scm}     |  71 ++---
 guix/scripts/refresh.scm                           |   1 +
 nix/libstore/builtins.cc                           |   6 +
 tests/containers.scm                               |  27 ++
 tests/file-systems.scm                             |   8 +
 tests/pypi.scm                                     |  10 +
 93 files changed, 3229 insertions(+), 854 deletions(-)
 create mode 100644 gnu/build/shepherd.scm
 create mode 100644 gnu/packages/bootloaders.scm
 delete mode 100644 gnu/packages/grub.scm
 create mode 100644 
gnu/packages/patches/gst-plugins-base-fix-test-on-32bit.patch
 create mode 100644 gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch
 create mode 100644 gnu/packages/patches/p7zip-CVE-2016-9296.patch
 create mode 100644 gnu/packages/patches/qemu-CVE-2017-2615.patch
 create mode 100644 gnu/packages/patches/qemu-CVE-2017-5578.patch
 create mode 100644 gnu/packages/patches/qemu-CVE-2017-5579.patch
 create mode 100644 gnu/packages/patches/qemu-CVE-2017-5856.patch
 create mode 100644 gnu/packages/patches/vsearch-unbundle-cityhash.patch
 copy gnu/packages/{cpio.scm => re2c.scm} (50%)
 delete mode 100644 gnu/packages/u-boot.scm
 copy guix/build-system/{cargo.scm => dub.scm} (71%)
 create mode 100644 guix/build/dub-build-system.scm
 create mode 100644 guix/import/stackage.scm
 copy guix/scripts/import/{cran.scm => stackage.scm} (57%)



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