branch core-updates updated (864a959 -> 3f9543a)

[Efraim Flashner]

efraim pushed a change to branch core-updates
in repository guix.

      from  864a959   gnu: luajit: Update to 2.1.0-beta2.
      adds  ce79279   gnu: python-pandas: Really fix build on 32bit.
      adds  ed6a21b   gnu: inetutils: Disable parallel tests.
      adds  63d6230   gnu: Remove obsolete numpy comment.
      adds  6741676   gnu: python-numpy-documentation: Use full git commit hash 
in submodule.
      adds  33e9490   gnu: Add python2-cliapp.
      adds  77e9941   gnu: Add python2-ttystatus.
      adds  c220f0b   gnu: Add python2-tracing.
      adds  b6b2ca5   gnu: Add python2-larch.
      adds  1f28b31   gnu: xf86-input-libinput: Update to 0.25.0.
      adds  9f91340   gnu: octave: Build with curl and graphicsmagick.
      adds  d9e94c6   gnu: graphicsmagick: Build with 16 bit quantum depth.
      adds  50b3982   gnu: youtube-dl: Update to 2017.03.07.
      adds  1b34a47   gnu: pius: Update to 2.2.4.
      adds  2704f5b   gnu: ibus: Update to 1.5.15.
      adds  ab84c13   gnu: ibus-anthy: Update to 1.5.9.
      adds  5595d4c   gnu: btrfs-progs: Update to 4.10.
      adds  ff79717   gnu: btrfs-progs/static: Correct description.
      adds  f2a7ce5   gnu: Add font-tamzen.
      adds  d4f6f78   gnu: hiawatha: Adjust description.
      adds  91c8724   Revert "gnu: neomutt: Configure with 'lmdb' and 
'tokyocabinet'."
      adds  469609a   gnu: neomutt: Update to 20170306.
      adds  5c95465   gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'.
      adds  fc1428d   gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640].
      adds  5ded35d   gnu: Add sambamba.
      adds  79f09fa   gnu: hmmer: Build reproducibly.
      adds  82ccc49   services: Add exim-service-type.
      adds  fe2b643   services: Create /var/log upon activation.
      adds  856be82   system: Avoid '_' as a pattern variable in 'match'.
      adds  563c5d4   services: openssh: Enable PAM.
      adds  1806a67   services: openssh: Remove deprecated options.
      adds  f895dce   services: openssh: Fix 'PrintLastLog' default behaviour.
      adds  97bede8   gnu: dub: Update to 1.2.2.
      adds  b500dc2   gnu: icestorm: Replace reference in icebox_vlog.
      adds  a2fa9c3   gnu: Add obnam.
      adds  d5eca4f   gnu: Add r-diptest.
      adds  1721fb4   gnu: Add r-modeltools.
      adds  a1f2668   gnu: Add r-flexmix.
      adds  5638e15   gnu: Add r-mclust.
      adds  c962816   gnu: Add r-prabclus.
      adds  cda0720   gnu: Add r-deoptimr.
      adds  c0cab38   gnu: Add r-robustbase.
      adds  5da4f84   gnu: Add r-trimcluster.
      adds  a409e8b   gnu: Add r-fpc.
      adds  036cd0c   gnu: Add r-ape.
      adds  fbf45d6   gnu: vsearch: Update to 2.4.2.
      adds  d4cebae   gnu: Add r-vgam.
      adds  7711f61   gnu: Add r-pbapply.
      adds  e08ad76   gnu: Add r-fnn.
      adds  c84c8f6   gnu: wget: Fix CVE-2017-6508.
      adds  4018745   doc: Update the package count.
      adds  47bdc5a   linux-initrd: Add a raw-initrd and use it to define 
base-initrd.
      adds  55fa534   gnu: Add emacs-memoize.
      adds  a156380   gnu: Add ghc-unexceptionalio.
      adds  c4b15cb   gnu: imagemagick: Update to 6.9.7-10.
      adds  e7b9dac   gnu: cuirass: Update to 0.0.1 revision 5.
      adds  612af7f   gnu: re2: Set CXX for cross-compilation.
      adds  5578c29   gnu: phonon: Install Qt extensions.
      adds  4bff300   gnu: Add phonon-backend-gstreamer.
      adds  5a717a9   gnu: wine: Update to 2.3.
      adds  1dbe3a8   build: GnuTLS is now a hard dependency.
      adds  0392f82   gnu: Add r-minqa.
      adds  21cfad4   gnu: Add r-rcppeigen.
      adds  aa84100   gnu: Add r-modelmetrics.
      adds  545d078   gnu: Add r-matrixmodels.
      adds  49dc1fa   gnu: Add r-quantreg.
      adds  c549864   gnu: Add r-nloptr.
      adds  51fc7d8   gnu: Add r-lme4.
      adds  a3eb8c8   gnu: Add r-pbkrtest.
      adds  ab2ec64   gnu: Add r-car.
      adds  aa890f6   gnu: Add r-caret.
      adds  362ea0d   gnu: Add r-rcppprogress.
      adds  fe68c8a   gnu: Add r-mnormt.
      adds  06085b5   gnu: Add r-numderiv.
      adds  5a200a2   gnu: Add r-sn.
      adds  d1906e3   gnu: Add r-tclust.
      adds  02eec38   gnu: Add r-ranger.
      adds  a5935d1   gnu: Add r-tsne.
      adds  eba5607   services: dovecot: Fix unix_listeners and fifo_listeners 
path types.
      adds  0a6bd10   gnu: Add le-certs.
      adds  301f12e   gnu: offlineimap: Update to 7.0.14.
      adds  998ac26   gnu: tintin++: Use a mirror:// URI.
      adds  239c226   Add 'guix pack'.
      adds  334c953   syscalls: Adjust 'define-bits' to macro literal semantics 
of 2.2.
      adds  56aef18   services: dovecot: Reimplement proper configuration 
functions.
      adds  720cb10   services: Move configuration functions that shouldn't be 
factorized.
      adds  7e81d69   pull: Default to HTTPS.
      adds  3f06f43   gnu: irssi: Update to 1.0.2.
      adds  108f69c   gnu: ecl: Update to 16.1.3.
      adds  49a8c92   gnu: linux-libre: Update to 4.10.2.
      adds  7bc57e7   gnu: address@hidden: Update to 4.9.14.
      adds  59bb178   gnu: address@hidden: Update to 4.4.53.
      adds  8f7ea70   gnu: guile-next: Increase max-silent-time.
      adds  3288e64   gnu: r-hexbin: Update to 1.27.1-1.
      adds  0216137   gnu: guile-next: Update to 2.1.8.
      adds  2617050   gnu: magit: Update to 2.10.3.
      adds  846344d   gnu: git-modes: Update to 1.2.4.
      adds  7a4dea5   gnu: manaplus: Update to 1.7.3.4.
      adds  87f1c7e   gnu: nss: Use 'modify-phases' syntax.
      adds  4f3dcdd   gnu: nss, nss-certs: Update to 3.29.3.
      adds  ca453df   gnu: xf86-video-nouveau: Update to 1.0.14.
      adds  17fb6fb   gnu: xf86-video-intel: Update to 2.99.917-4-7e9e92c.
      adds  dd8ecb3   gnu: notmuch: Update to 0.24.
      adds  8298df9   gnu: Add minizip.
      adds  1bbbb0b   gnu: diffoscope: Update to 78.
      adds  35db2d3   gnu: Add python-htmlmin.
      adds  78c5566   gnu: Add python-flask-htmlmin.
      adds  a71c863   gnu: Add python-flask-login.
       new  3f9543a   Merge remote-tracking branch 'origin/master' into 
core-updates

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile.am                                        |   9 +-
 build-aux/hydra/gnu-system.scm                     |   9 +-
 build-aux/make-binary-tarball.scm                  |  47 --
 configure.ac                                       |   9 +-
 doc/guix.texi                                      | 207 +++++--
 gnu/local.mk                                       |   1 +
 gnu/packages/admin.scm                             |   5 +-
 gnu/packages/backup.scm                            |  33 +
 gnu/packages/bioinformatics.scm                    | 143 ++++-
 gnu/packages/certs.scm                             |  62 +-
 gnu/packages/ci.scm                                |   6 +-
 gnu/packages/compression.scm                       |  27 +
 gnu/packages/emacs.scm                             |  39 +-
 gnu/packages/fonts.scm                             |  64 ++
 gnu/packages/fpga.scm                              |   5 +
 gnu/packages/games.scm                             |   8 +-
 gnu/packages/gnupg.scm                             |   4 +-
 gnu/packages/gnuzilla.scm                          |  95 ++-
 gnu/packages/guile.scm                             |   5 +-
 gnu/packages/haskell.scm                           |  18 +
 gnu/packages/ibus.scm                              |   8 +-
 gnu/packages/imagemagick.scm                       |   6 +-
 gnu/packages/irc.scm                               |   4 +-
 gnu/packages/kde-frameworks.scm                    |  50 +-
 gnu/packages/ldc.scm                               |   4 +-
 gnu/packages/linux.scm                             |  22 +-
 gnu/packages/lisp.scm                              |  14 +-
 gnu/packages/mail.scm                              |  21 +-
 gnu/packages/maths.scm                             |   5 +-
 gnu/packages/messaging.scm                         |   4 +-
 gnu/packages/package-management.scm                |   4 +-
 .../patches/hmmer-remove-cpu-specificity.patch     |  22 +
 .../patches/python-pandas-skip-failing-tests.patch |  44 +-
 gnu/packages/patches/wget-CVE-2017-6508.patch      |  45 ++
 gnu/packages/python.scm                            | 194 +++++-
 gnu/packages/regex.scm                             |  14 +-
 gnu/packages/statistics.scm                        | 677 ++++++++++++++++++++-
 gnu/packages/video.scm                             |   4 +-
 gnu/packages/web.scm                               |   7 +-
 gnu/packages/wget.scm                              |   2 +
 gnu/packages/wine.scm                              |   9 +-
 gnu/packages/xorg.scm                              |  14 +-
 gnu/services.scm                                   |   7 +-
 gnu/services/configuration.scm                     |  40 --
 gnu/services/cups.scm                              |  32 +
 gnu/services/kerberos.scm                          |  15 +
 gnu/services/mail.scm                              | 142 ++++-
 gnu/services/ssh.scm                               |  42 +-
 gnu/system.scm                                     |   4 +-
 gnu/system/install.scm                             |  63 +-
 gnu/system/linux-initrd.scm                        | 129 ++--
 guix/build/syscalls.scm                            |   8 +-
 guix/scripts/pack.scm                              | 229 +++++++
 guix/scripts/pull.scm                              |  22 +-
 54 files changed, 2261 insertions(+), 442 deletions(-)
 delete mode 100644 build-aux/make-binary-tarball.scm
 create mode 100644 gnu/packages/patches/hmmer-remove-cpu-specificity.patch
 create mode 100644 gnu/packages/patches/wget-CVE-2017-6508.patch
 create mode 100644 guix/scripts/pack.scm