[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
branch core-updates updated (b99eec8 -> f67337e)
|
From: |
Mark H. Weaver |
|
Subject: |
branch core-updates updated (b99eec8 -> f67337e) |
|
Date: |
Sun, 19 Mar 2017 18:55:50 -0400 (EDT) |
mhw pushed a change to branch core-updates
in repository guix.
from b99eec8 gnu: librep: Update to 0.92.6.
adds 6c4ccf3 gnu: ngs-sdk: Update to 1.3.0.
adds 5021f54 gnu: ncbi-vdb: Update to 2.8.2.
adds 7011119 gnu: ncbi-vdb: Use modify-phases syntax.
adds 558e230 gnu: ncbi-vdb: Override search path for java-ngs.
adds d5e1716 gnu: ncbi-vdb: Install configuration files.
adds 7984935 gnu: sra-tools: Update to 2.8.2-1.
adds 2441c28 gnu: Add r-seurat.
adds 2c715a9 gnu: password-store: Fix compatibility with GnuPG 2.1.19.
adds 4c0c4db utils: Move base16 procedures to (guix base16).
adds d938a58 gexp: Add '=>' syntax to import computed modules.
adds 34d60c4 services: connman: Rework service.
adds 146db52 memoization: Micro-optimize code produced by
'define-cache-procedure'.
adds 2971f39 pack: Honor command-line options related to the store.
adds b1edfbc pack: Add '--format' option and Docker output support.
adds 84dda5a pack: Use a fixed timestamp in Docker images.
adds 54241dc docker: Build images in a reproducible fashion.
adds 9e84ea3 pack: Honor symlinks in the Docker back-end.
adds db3f2b6 pack: Allow for "-S /opt/foo=".
adds 107b8da doc: Mention 'guix pack' reproducibility.
adds ad172c4 doc: Reorganize categories.
adds 1e5b8be gnu: virglrenderer: Fix CVE-2017-6386.
adds 49ac6db gnu: qemu: Fix CVE-2017-{2620,2630}.
adds bcc5b74 gnu: address@hidden: Update to 4.9.15.
adds 2044306 gnu: address@hidden: Update to 4.4.54.
adds 2ec5ba8 gnu: linux-libre: Update to 4.10.3.
adds 366efcb gnu: dns: Fix typo and use @dfn in descriptions.
adds 754667f gnu: Add liburcu.
adds f9cdf1c gnu: Add knot.
adds 3078821 gnu: asciidoc: Use local docbook-xml package.
adds 54d556b gnu: youtube-dl: Update to 2017.03.16.
adds 708b54a doc: Really document 'guix pack --format'.
adds 8f00691 gnu: Add r-boot.
adds c7e80a7 gnu: Add r-mass.
adds 7489258 gnu: Add r-class.
adds a27bfb8 gnu: Add r-cluster.
adds c1999c5 gnu: Add r-codetools.
adds 69fddd2 gnu: Add r-foreign.
adds e88bad6 gnu: Add r-kernsmooth.
adds 060c128 gnu: r-lattice: Move to other recommended R packages.
adds 69e14f9 gnu: r-matrix: Move to set of recommended R packages.
adds 248f652 gnu: Add r-nlme.
adds ac8d738 gnu: r-mgcv: Move to set of recommended R packages.
adds a5a3436 gnu: r-nnet: Move to set of recommended R packages.
adds 567b154 gnu: r-rpart: Move to the set of recommended packages.
adds 4b005c7 gnu: Add r-spatial.
adds 6eaa9bf gnu: r-survival: Move to set of recommended R packages.
adds aeb64f3 gnu: r: Do not build recommended packages.
adds f1fe528 gnu: Add r-with-recommended-packages.
adds 2d7c4ae gnu: r: Rename to r-minimal.
adds 60c9190 gnu: r-minimal: Fix remaining reproducibility problems.
adds ef71ed8 gnu: snakemake: Update to 3.11.2.
adds 0c4dbdc gnu: Add ocaml-sqlite3.
adds 91df9ea gnu: Add ocaml-csv.
adds ba1be53 gnu: Add ocaml-gsl.
adds 0a3063d gnu: Add ocaml-mcl.
adds 114a325 gnu: Add libpng-apng.
adds 8f98581 gnu: libpng-apng: Remove unnecessary call to libtool.
adds b0dcb52 gnu: rust: Update to 1.15.0.
adds 893bc3f gnu: cargo: Use upstream cargo.
adds 25fb58a build-system/cargo (cargo-build): Add cargo-build-flags,
remove configure-flags.
adds 4ed64c5 build/cargo-build-system: Make cargo-build-system install
working packages.
adds 0d3ddd4 gnu: btrfs-progs: Update to 4.10.1.
adds 039601e gnu: btrfs-progs: Use @dfn in description.
adds cbef279 gnu: ninja: Update to 1.7.2.
adds 2a047d5 gnu: libwebp: Update to 0.6.0.
adds 715dd13 gnu: libx264: Update to 20170316-2245.
adds 7c78beb gnu: libbluray: Update to 1.0.0.
adds 48b4443 pack: Move absolute file name to <compressor>.
adds 176febe profiles: Packages in a profile can be cross-compiled.
adds 5461115 pack: Add '--target'.
adds 36626c5 build: Require Guile >= 2.0.9.
adds 4fd06a4 http-client: Avoid name clash with
'open-connection-for-uri' in 2.2.0.
adds 7f608a9 doc: Make "Application Setup" slightly more visible.
adds 55f7a27 gnu: ocaml-qtest: Update to 2.5.
adds b6bd9a7 gnu: emacs-slime: Update to 2.19.
adds a53d671 gnu: Add itpp.
adds 6d5f63b gnu: Add maxflow.
adds 84aac61 gnu: rustc: Fix process test.
adds 7208995 file-systems: Factorize file-system-packages.
adds d54db52 bug#26152: [PATCH] gnu: limnoria: Update to 20170110.
adds da31b9c doc: Fix examples.
adds fdcb04a doc: Clarify reference.
adds 21122bd gnu: Add niftilib.
adds 7601b9f gnu: wine: Update to 2.4.
adds 57d0bdf gnu: guix: Don't ignore user's GUILE_LOAD_COMPILED_PATH.
adds 525acb6 gnu: guile-8sync: Update to 0.4.2.
adds eba72e1 gnu: apl: Update to 1.7.
adds f729a4d gnu: niftilib: Simplify build phases.
adds 8df672a gnu: Add GNU Mach.
adds f6396d8 gnu: Rename "guile-next" to "guile".
adds 8f4acad gnu: Add 'package-for-guile-2.0'.
adds bd19f65 gnu: haunt: Default to Guile 2.2.
adds bdf1022 gnu: guile-reader: Default to Guile 2.2.
adds 7c86c03 gnu: guile-commonmark: Default to Guile 2.2.
adds 26e34e1 services: file-system-shepherd-service: Make it find the
fsck programs.
adds 512fc6d gnu: address@hidden: Add fix from upstream.
adds 6191fef gnu: icecat: Add selected fixes from upstream
mozilla-esr45.
adds fc1bfca gnu: u-boot: Update to 2017.03.
adds 9970ef6 services: Remove Tab character from source code
whitespace.
adds 9baf017 gnu: address@hidden: Update to 4.4.55.
adds 92c4216 gnu: address@hidden: Update to 4.9.16.
adds 8299c69 gnu: linux-libre: Update to 4.10.4.
adds e05fc44 gnu: Add pdfgrep.
new f67337e Merge branch 'master' into core-updates
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile.am | 2 +
README | 2 +-
build-aux/download.scm | 9 +-
configure.ac | 2 +-
doc/guix.texi | 141 ++++--
gnu/local.mk | 8 +-
gnu/packages/apl.scm | 7 +-
gnu/packages/bioinformatics.scm | 252 ++++++---
gnu/packages/bootloaders.scm | 4 +-
gnu/packages/datastructures.scm | 26 +-
gnu/packages/dns.scm | 93 +++-
gnu/packages/documentation.scm | 9 +
gnu/packages/emacs.scm | 6 +-
gnu/packages/gnuzilla.scm | 8 +-
gnu/packages/guile.scm | 73 +--
gnu/packages/hurd.scm | 34 +-
gnu/packages/image.scm | 100 +++-
gnu/packages/irc.scm | 4 +-
gnu/packages/libevent.scm | 28 +-
gnu/packages/linux.scm | 22 +-
gnu/packages/machine-learning.scm | 56 +-
gnu/packages/maths.scm | 81 ++-
gnu/packages/ninja.scm | 7 +-
gnu/packages/ocaml.scm | 58 ++-
gnu/packages/package-management.scm | 7 +-
gnu/packages/password-utils.scm | 4 +-
...vent-2.0-evbuffer-add-use-last-with-datap.patch | 38 ++
gnu/packages/patches/libwebp-CVE-2016-9085.patch | 144 ------
gnu/packages/patches/ninja-tests.patch | 48 --
.../patches/password-store-gnupg-compat.patch | 53 ++
gnu/packages/patches/qemu-CVE-2017-2620.patch | 134 +++++
gnu/packages/patches/qemu-CVE-2017-2630.patch | 47 ++
.../patches/virglrenderer-CVE-2017-6386.patch | 54 ++
gnu/packages/pdf.scm | 30 ++
gnu/packages/python.scm | 7 +-
gnu/packages/qemu.scm | 2 +
gnu/packages/rust.scm | 532 ++++++++++++++++++-
gnu/packages/skribilo.scm | 4 +-
gnu/packages/spice.scm | 1 +
gnu/packages/statistics.scm | 562 ++++++++++++++++-----
gnu/packages/tls.scm | 2 +-
gnu/packages/video.scm | 12 +-
gnu/packages/wine.scm | 4 +-
gnu/services/base.scm | 16 +-
gnu/services/networking.scm | 86 ++--
gnu/system/file-systems.scm | 26 +
gnu/system/linux-initrd.scm | 18 +-
guix/base16.scm | 83 +++
guix/build-system/cargo.scm | 3 +-
guix/build-system/r.scm | 2 +-
guix/build/cargo-build-system.scm | 116 ++++-
guix/build/download.scm | 32 +-
guix/derivations.scm | 1 +
guix/docker.scm | 154 ++++--
guix/gexp.scm | 40 +-
guix/http-client.scm | 25 +-
guix/import/cran.scm | 18 +-
guix/import/snix.scm | 3 +-
guix/memoization.scm | 21 +-
guix/pk-crypto.scm | 6 +-
guix/profiles.scm | 10 +-
guix/scripts/archive.scm | 31 +-
guix/scripts/authenticate.scm | 4 +-
guix/scripts/download.scm | 4 +-
guix/scripts/hash.scm | 2 +-
guix/scripts/lint.scm | 6 +-
guix/scripts/pack.scm | 151 +++++-
guix/scripts/substitute.scm | 23 +-
guix/serialization.scm | 3 +-
guix/store.scm | 1 +
guix/utils.scm | 65 +--
gnu/artwork.scm => tests/base16.scm | 34 +-
tests/gexp.scm | 39 ++
tests/guix-build.sh | 4 +-
tests/hash.scm | 2 +-
tests/nar.scm | 12 +-
tests/pack.scm | 3 +-
tests/pk-crypto.scm | 3 +-
tests/profiles.scm | 31 +-
tests/utils.scm | 9 +-
80 files changed, 2814 insertions(+), 990 deletions(-)
create mode 100644
gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch
delete mode 100644 gnu/packages/patches/libwebp-CVE-2016-9085.patch
delete mode 100644 gnu/packages/patches/ninja-tests.patch
create mode 100644 gnu/packages/patches/password-store-gnupg-compat.patch
create mode 100644 gnu/packages/patches/qemu-CVE-2017-2620.patch
create mode 100644 gnu/packages/patches/qemu-CVE-2017-2630.patch
create mode 100644 gnu/packages/patches/virglrenderer-CVE-2017-6386.patch
create mode 100644 guix/base16.scm
copy gnu/artwork.scm => tests/base16.scm (55%)
- branch core-updates updated (b99eec8 -> f67337e),
Mark H. Weaver <=