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32/39: gnu: Add r-fastseg.
From: |
Ricardo Wurmus |
Subject: |
32/39: gnu: Add r-fastseg. |
Date: |
Thu, 17 Aug 2017 11:27:37 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit d4a1e918cbbc583bf626bda44bbb862bca8e9265
Author: Ricardo Wurmus <address@hidden>
Date: Tue Aug 15 15:11:45 2017 +0200
gnu: Add r-fastseg.
* gnu/packages/bioinformatics.scm (r-fastseg): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 56f2d5d..5dbf2ce 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9289,6 +9289,36 @@ modification. The client creates and manages a local
cache of files retrieved
by the user, helping with quick and reproducible access.")
(license license:artistic2.0)))
+(define-public r-fastseg
+ (package
+ (name "r-fastseg")
+ (version "1.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "fastseg" version))
+ (sha256
+ (base32
+ "083wiz03q9mynwchs9frlpp6c84dncri5ncibx6h82p228cpja6h"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "http://www.bioinf.jku.at/software/fastseg/index.html")
+ (synopsis "Fast segmentation algorithm for genetic sequencing data")
+ (description
+ "Fastseg implements a very fast and efficient segmentation algorithm.
+It can segment data from DNA microarrays and data from next generation
+sequencing for example to detect copy number segments. Further it can segment
+data from RNA microarrays like tiling arrays to identify transcripts. Most
+generally, it can segment data given as a matrix or as a vector. Various data
+formats can be used as input to fastseg like expression set objects for
+microarrays or GRanges for sequencing data.")
+ (license license:lgpl2.0+)))
+
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package
- 21/39: gnu: Add r-sp., (continued)
- 21/39: gnu: Add r-sp., Ricardo Wurmus, 2017/08/17
- 19/39: gnu: Add r-ggally., Ricardo Wurmus, 2017/08/17
- 23/39: gnu: Add r-rmtstat., Ricardo Wurmus, 2017/08/17
- 25/39: gnu: Add r-distillery., Ricardo Wurmus, 2017/08/17
- 28/39: gnu: Add r-inline., Ricardo Wurmus, 2017/08/17
- 33/39: gnu: Add r-qvalue., Ricardo Wurmus, 2017/08/17
- 37/39: gnu: Add r-energy., Ricardo Wurmus, 2017/08/17
- 35/39: gnu: Add r-limsolve., Ricardo Wurmus, 2017/08/17
- 29/39: gnu: Add r-bbmle., Ricardo Wurmus, 2017/08/17
- 31/39: gnu: Add r-emdbook., Ricardo Wurmus, 2017/08/17
- 32/39: gnu: Add r-fastseg.,
Ricardo Wurmus <=
- 34/39: gnu: Add r-lpsolve., Ricardo Wurmus, 2017/08/17
- 39/39: gnu: Add r-ksamples., Ricardo Wurmus, 2017/08/17