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branch staging updated (4028fd3 -> 30dfac2)


From: Marius Bakke
Subject: branch staging updated (4028fd3 -> 30dfac2)
Date: Sat, 2 Sep 2017 09:58:27 -0400 (EDT)

mbakke pushed a change to branch staging
in repository guix.

      from  4028fd3   Merge branch 'master' into staging
       new  7035d2d   gnu: libva: Update to 1.8.3.
       new  9238a9c   gnu: dbus: Update to 1.10.22.
       new  66d4cd7   gnu: util-linux: Update to 2.30.1.
       new  53e16a5   gnu: libdrm: Update to 2.4.83.
       new  57cdc1f   gnu: mesa: Update to 17.1.8.
       new  2ec339c   Revert "gnu: lzip: Update to 1.19."
       new  a4a3d93   gnu: harfbuzz: Update to 1.5.0.
       new  d2ee294   gnu: pango: Update to 1.40.11.
      adds  cd669fd   gnu: Add cmdtest.
      adds  ab11563   gnu: xauth: Enable tests.
      adds  6909c24   gnu: enlightenment: Update to 0.21.9.
      adds  fab46af   gnu: tdb: Update to 1.3.15.
      adds  b45c050   gnu: Remove unneeded import.
      adds  9978567   gnu: babl: Update to 0.1.30.
      adds  522f199   gnu: perl-xml-atom: Update to 0.42.
      adds  88d5889   gnu: perl-www-opensearch: Provide Module::Install.
      adds  ebd1811   gnu: perl: Work around more "dotless @INC" build failures.
      adds  ff16170   gnu: nano: Update to 2.8.7.
      adds  39c853b   gnu: totem: Wrap environment for thumbnailer.
      adds  2999dcd   gnu: gnome: Install some GStreamer plugins.
      adds  1c059a6   gnu: wxwidgets: Update to 3.0.3.
      adds  a9af060   gnu: libfilezilla: Update to 0.10.1.
      adds  01f248b   gnu: filezilla: Update to 3.27.1.
      adds  c10d502   gnu: iodine: Fix path to ifconfig.
      adds  ad53923   gnu: youtube-dl: Update to 2017.08.27.1.
      adds  5f13bf0   gnu: Fetch several Git sources over HTTPS.
      adds  51988e3   gnu: Give descriptive file-names for some Git sources.
      adds  152fc95   gnu: srt2vtt: Update source URL.
      adds  9baa969   gnu: libzip: Fix CVE-2017-12858.
      adds  15d6148   gnu: xf86-video-freedreno: Add missing input.
      adds  9e1fe3d   bootloader: Emit warnings with 'warning'.
      adds  a881a40   gnu: emacs-nix-mode: Move to package-management.scm.
      adds  8bd5231   marionette: 'wait-for-file' really raises an error when a 
file is missing.
      adds  0a80981   marionette: Fix typing of capital letters.
      adds  06b8eae   marionette: Augment the set of keystrokes.
      adds  7f09020   services: user-processes: Reap child processes.
      adds  475b99f   gnu: jemalloc: Update to 5.0.1.
      adds  af9bb4c   gnu: pspp: Update to 1.0.1.
      adds  174fbd5   gnu: r-minimal: Remove timestamp from man page.
      adds  e184de5   gnu: gnupg: Update to 2.2.0.
      adds  92cc6a5   gnu: gnupg: Clean up arguments.
      adds  8b618c7   gnu: emacs-org: Update to 20170828
      adds  47deafb   gnu: font-gnu-unifont: Update to 10.0.06.
      adds  84d9abe   gnu: Add python-pyalsaaudio.
      adds  69dcad3   gnu: emacs-lua-mode: Update to current git.
      adds  02654c4   gnu: Escape @ in the perl-importer package description.
      adds  0ae32da   gnu: qtox: Update to 1.11.0.
      adds  08cba8c   gnu: libgcrypt: Fix CVE-2017-0379.
      adds  d3f0e09   gnu: tiled: Update to 1.0.3.
      adds  d6a7268   gnu: font-mathjax: Update to 2.7.2.
      adds  77217b4   gnu: font-mathjax, js-mathjax: Remove hard-coded version.
      adds  b1c699c   gnu: perl-tk: Update to 804.034.
      adds  3c8ba11   Update e-mail for Kei Kebreau.
      adds  249ab8c   gnu: nginx: Install man page.
      adds  b85a66b   gnu: dtach: Install man page.
      adds  07e62ae   gnu: Add python-pysocks.
      adds  7a276cd   gnu: Add python-pyaes.
      adds  13035eb   gnu: electrum: Update to 2.9.3.
      adds  9dd14f1   gnu: wine: Update to 2.0.2.
      adds  f3f82d1   gnu: Add fzy.
      adds  e0fbf37   gnu: coda: Update to 2.18.2.
      adds  c93ffc1   gnu: kdevelop: Update to 5.1.2.
      adds  a00379e   gnu: Add linkchecker.
      adds  b9319c1   gnu: hyperrogue: Update to 10.0g.
      adds  e7c76b0   gnu: Add python-lzstring.
      adds  bac5fd2   gnu: python-jinja2: Update to 2.9.6.
      adds  beed6ab   gnu: Add python-colormath.
      adds  4a7d200   gnu: Add python-spectra.
      adds  799247d   gnu: multiqc: Update to 1.2.
      adds  ffeeda6   gnu: jsoncpp: Update to 1.8.2.
      adds  2de7d13   gnu: qemu: Update to 2.10.0.
      adds  552c3e9   gnu: vlc: Build with modular qt.
      adds  eb1f242   gnu: vlc: Remove obsolete test workaround.
      adds  9749746   gnu: mbedtls-apache: Update to 2.6.0 [fixes 
CVE-2017-14032].
      adds  9ff7161   gnu: Add texlive-latex-acmart.
      adds  cad88b8   gnu: claws-mail: Update to 3.15.1.
      adds  4f68156   gnu: gd: Replace with 2.2.5.
      adds  3e0c54b   gnu: vlc: Recover lost phase.
      adds  2d2e97b   gnu: vlc: Fix build and clean up expression.
      adds  690a904   gnu: metabat: Update to 2.11.3.
      adds  9770cbf   gnu: ruby-2.4.1: Fix CVE-2017-{0899,0900,0901,0902}.
      adds  db54251   gnu: ruby-2.3.4: Fix CVE-2017-{0899,0900,0901,0902}.
      adds  c959e5a   gnu: ruby-2.2.7: Fix CVE-2017-{0899,0900,0901,0902}.
      adds  0691851   gnu: bioinformatics: Work around more "dotless @INC" 
build failures.
      adds  1c39f3b   gnu: Add "scotch32".
      adds  1c25a52   gnu: Add pt-scotch32.
      adds  79ada57   gnu: knot: Update to 2.5.4.
      adds  b6dc69a   services: mpd: Remove the mpd-file field.
      adds  b9dcace   gnu: Add emacs-prop-menu.
      adds  5883bb7   gnu: Add emacs-idris-mode.
      adds  7e31427   gnu: python-pyjwt: Update to 1.5.2 [fixes CVE-2017-11424].
      adds  b1d1a10   gnu: python-sge-pygame: Update to 1.5.1.
      adds  95c1324   gnu: python-tmx: Update to 1.10.
      adds  4eebfef   gnu: retux: Update to 1.3.5.
      adds  caa4e79   gnu: Add r-dbplyr.
      adds  c92483b   gnu: python-rpy2: Update license.
      adds  deee5dd   gnu: python-rpy2: Update to 2.9.0.
      adds  59ff96a   gnu: Remove python2-rpy2.
      adds  ff54f19   gnu: postgresql: Update to 9.6.5.
      adds  76fed2b   gnu: libxml2: Fix 
CVE-2017-{0663,7375,7376,9047,9048,9049,9050}.
      adds  fa9f522   gnu: sddm: Update to 0.15.0.
      adds  a9d5e4b   gnu: Fix current-guix.
      adds  d36212e   gnu: efl: Update to 1.20.3.
      adds  0ff44ba   gnu: graphicsmagick: Fix CVE-2017-{13775,13776,13777}.
      adds  1b3f5fc   gnu: libxml2/fixed: Use patches from inherited package.
      adds  d215e41   gnu: address@hidden: Update to 4.4.85.
      adds  2131663   gnu: address@hidden: Update to 4.9.46.
      adds  fe36ecf   gnu: linux-libre: Update to 4.12.10.
      adds  689042e   gnu: python2-cliapp: Enable tests.
      adds  f618086   gnu: python2-ttystatus: Enable tests.
      adds  a0596a2   gnu: python2-larch: Enable tests.
      adds  e3a1a1d   gnu: hdf5: Add output for fortran interface.
      adds  fd0378a   gnu: hdf5: Avoid unneeded store references to compilers.
      adds  e464b45   gnu: hdf4: Avoid unneeded store references to compilers.
      adds  43d0167   gnu: netcdf: Fix reproducibility issue; remove unneeded 
references.
      adds  25bd1fc   gnu: metabat: Update to 2.12.1.
      adds  f4bf420   gnu: vsearch: Update to 2.4.4.
      adds  7d099cb   gnu: mysql: Enable tests on aarch64.
      adds  eda8f36   gnu: r-rcas: Update to 1.3.3.
      adds  75690c9   gnu: r-rcas: Correct license.
      adds  fe55199   scripts: Remove 'max-silent-time' from the default 
options.
      adds  5c5ae46   packages: 'fold-packages' takes an optional 'modules' 
parameter.
      adds  ab966b8   gnu: Add emacs-2048-game.
      adds  4735393   gnu: emacs-ebuild-mode: Update to 1.37.
      adds  833ade6   gnu: Add emacs-tuareg.
      adds  5fe2a13   gnu: djvulibre: Remove timestamps from .svgz files.
      adds  dcf7a8a   gnu: java-slf4j-api: Fix tests.
      adds  1cf3066   gnu: php: Update to 7.1.9.
      adds  3c2a5bf   gnu: r-servr: Update to 0.7.
      adds  fefe9f4   gnu: r-matrix: Update to 1.2-11.
      adds  2d99a31   gnu: r-mgcv: Update to 1.8-19.
      adds  b93881b   gnu: r-scales: Update to 0.5.0.
      adds  3949aef   gnu: r-bh: Update to 1.65.0-1.
      adds  5a00ef0   gnu: r-knitr: Update to 1.17.
      adds  edd5fd7   gnu: r-rlang: Update to 0.1.2.
      adds  fb10c92   gnu: r-tibble: Update to 1.3.4.
      adds  5d84369   gnu: r-ade4: Update to 1.7-8.
      adds  e3323e0   gnu: r-commonmark: Update to 1.4.
      adds  7d60652   gnu: r-httr: Update to 1.3.1.
      adds  2dda8fc   gnu: r-plotrix: Update to 3.6-6.
      adds  d574d6b   gnu: r-rcpparmadillo: Update to 0.7.960.1.2.
      adds  347cab6   gnu: r-fastcluster: Update to 1.1.24.
      adds  9077f6d   gnu: r-tclust: Update to 1.3-1.
      adds  ea4d4f7   gnu: r-shape: Update to 1.4.3.
      adds  a5c2980   gnu: r-circlize: Update to 0.4.1.
      adds  eeb5432   gnu: r-powerlaw: Update to 0.70.1.
      adds  38ea6cf   gnu: r-reshape: Update to 0.8.7.
      adds  bf958fc   gnu: r-ggally: Update to 1.3.2.
      adds  f7b1721   gnu: r-sp: Update to 1.2-5.
      adds  28f2f89   gnu: r-distillery: Update to 1.0-4.
      adds  c62276b   gnu: r-ksamples: Update to 1.2-7.
      adds  6bd2798   gnu: r-bookdown: Update to 0.5.
      adds  7b92acd   gnu: r-maldiquant: Update to 1.16.4.
      adds  db2e438   gnu: r-vegan: Update to 2.4-4.
      adds  c4a4ef3   gnu: Add r-tidyselect.
      adds  89b620e   gnu: r-tidyr: Update to 0.7.0.
      adds  81195d1   gnu: r-genomicalignments: Update to 1.12.2.
      adds  2da21e4   gnu: python-icalendar: Update to 3.11.7.
      adds  19ecdbe   gnu: python-click-threading: Update to 0.4.3.
      adds  3a91ac8   gnu: python-click-log: Update to 0.2.0.
      adds  3bf0245   gnu: vdirsyncer: Update to 0.16.2.
      adds  ebbb630   gnu: r-minimal: Update to 3.4.1.
      adds  81fe131   build: emacs-build-system: Make the install phase more 
helpful.
      adds  d5909be   gnu: gparted: Update home page.
      adds  0c3a167   gnu: python-ruamel.yaml: Update to 0.15.33.
      adds  def056d   gnu: perl-context-preserve: Update source URL.
      adds  bbfc523   gnu: dub: Update to 1.5.0.
      adds  33fd32c   gnu: youtube-dl: Update to 2017.09.02.
      adds  6106d19   gnu: perl-html-tree: Update to 5.07.
      adds  2038a48   gnu: Add python-xenon.
      adds  75f2395   nls: Update 'fr' translation.
      adds  7bd65a6   gnu: swish-e: Work around compilation error and test 
failures.
      adds  f306825   gnu: exiv2: Update source checksum.
      adds  47111bb   gnu: address@hidden: Update to 2.8.13.
      adds  3fe666a   gnu: perl-www-opensearch: Enable tests.
      adds  7ade802   gnu: Add libdmtx.
      adds  7ae9542   gnu: Add prison.
      adds  9bc38f2   gnu: Add rosegarden.
      adds  65e4109   gnu: emacs-cider: Update to 0.15.0.
       new  30dfac2   Merge branch 'master' into staging

The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .mailmap                                           |     2 +-
 doc/guix.texi                                      |     3 -
 gnu/bootloader.scm                                 |     6 +-
 gnu/build/marionette.scm                           |    41 +-
 gnu/local.mk                                       |    32 +-
 gnu/packages.scm                                   |    12 +-
 gnu/packages/admin.scm                             |     2 +-
 gnu/packages/aidc.scm                              |    24 +
 gnu/packages/audio.scm                             |    28 +-
 gnu/packages/backup.scm                            |     2 +-
 gnu/packages/bioinformatics.scm                    |    64 +-
 gnu/packages/calendar.scm                          |     2 +-
 gnu/packages/check.scm                             |    47 +
 gnu/packages/compression.scm                       |    31 +-
 gnu/packages/cran.scm                              |    32 +-
 gnu/packages/databases.scm                         |    15 +-
 gnu/packages/dav.scm                               |     4 +-
 gnu/packages/disk.scm                              |     2 +-
 gnu/packages/display-managers.scm                  |    16 +-
 gnu/packages/djvu.scm                              |     8 +
 gnu/packages/dns.scm                               |     4 +-
 gnu/packages/documentation.scm                     |     2 +-
 gnu/packages/emacs.scm                             |   153 +-
 gnu/packages/embedded.scm                          |     4 +-
 gnu/packages/engineering.scm                       |     1 -
 gnu/packages/enlightenment.scm                     |     8 +-
 gnu/packages/finance.scm                           |     7 +-
 gnu/packages/fltk.scm                              |     2 +-
 gnu/packages/fonts.scm                             |     4 +-
 gnu/packages/freedesktop.scm                       |     2 +-
 gnu/packages/ftp.scm                               |    11 +-
 gnu/packages/game-development.scm                  |    14 +-
 gnu/packages/games.scm                             |    12 +-
 gnu/packages/gd.scm                                |    20 +-
 gnu/packages/gimp.scm                              |     4 +-
 gnu/packages/gl.scm                                |     8 +-
 gnu/packages/glib.scm                              |     4 +-
 gnu/packages/gnome.scm                             |    10 +-
 gnu/packages/gnunet.scm                            |     2 +-
 gnu/packages/gnupg.scm                             |    52 +-
 gnu/packages/gnustep.scm                           |     2 +-
 gnu/packages/gtk.scm                               |    10 +-
 gnu/packages/guile.scm                             |     2 +
 gnu/packages/hexedit.scm                           |     2 +-
 gnu/packages/image.scm                             |     4 +-
 gnu/packages/imagemagick.scm                       |     5 +-
 gnu/packages/java.scm                              |    27 +-
 gnu/packages/javascript.scm                        |    12 +-
 gnu/packages/jemalloc.scm                          |     8 +-
 gnu/packages/kde-frameworks.scm                    |    26 +
 gnu/packages/kde.scm                               |     8 +-
 gnu/packages/ldc.scm                               |     4 +-
 gnu/packages/linux.scm                             |    16 +-
 gnu/packages/mail.scm                              |     4 +-
 gnu/packages/maths.scm                             |   177 +-
 gnu/packages/messaging.scm                         |     4 +-
 gnu/packages/microcom.scm                          |     2 +-
 gnu/packages/music.scm                             |    96 +-
 gnu/packages/nano.scm                              |     4 +-
 gnu/packages/networking.scm                        |     2 +-
 gnu/packages/ocaml.scm                             |    40 +
 gnu/packages/package-management.scm                |    30 +-
 gnu/packages/patches/gd-CVE-2017-7890.patch        |    30 -
 .../patches/graphicsmagick-CVE-2017-13775.patch    |   195 +
 ...phicsmagick-CVE-2017-13776+CVE-2017-13777.patch |   179 +
 gnu/packages/patches/libxml2-CVE-2017-0663.patch   |    53 +
 gnu/packages/patches/libxml2-CVE-2017-7375.patch   |    45 +
 gnu/packages/patches/libxml2-CVE-2017-7376.patch   |    41 +
 .../libxml2-CVE-2017-9047+CVE-2017-9048.patch      |   130 +
 .../libxml2-CVE-2017-9049+CVE-2017-9050.patch      |   319 +
 gnu/packages/patches/libzip-CVE-2017-12858.patch   |    45 +
 gnu/packages/patches/metabat-fix-boost-issue.patch |    27 -
 .../patches/metabat-remove-compilation-date.patch  |    16 -
 .../patches/multiqc-fix-git-subprocess-error.patch |    16 -
 ...ython2-larch-coverage-4.0a6-compatibility.patch |    29 +
 gnu/packages/patches/qemu-CVE-2017-10664.patch     |    27 -
 gnu/packages/patches/qemu-CVE-2017-10806.patch     |    38 -
 gnu/packages/patches/qemu-CVE-2017-10911.patch     |   106 -
 gnu/packages/patches/qemu-CVE-2017-11334.patch     |    52 -
 gnu/packages/patches/qemu-CVE-2017-11434.patch     |    25 -
 gnu/packages/patches/qemu-CVE-2017-12809.patch     |    38 -
 gnu/packages/patches/qemu-CVE-2017-7493.patch      |   182 -
 gnu/packages/patches/qemu-CVE-2017-8112.patch      |    41 -
 gnu/packages/patches/qemu-CVE-2017-8309.patch      |    46 -
 gnu/packages/patches/qemu-CVE-2017-8379.patch      |    98 -
 gnu/packages/patches/qemu-CVE-2017-8380.patch      |    53 -
 gnu/packages/patches/qemu-CVE-2017-9524.patch      |   287 -
 .../patches/ruby-2.2.7-rubygems-2613-ruby22.patch  |   355 +
 .../patches/ruby-2.3.4-rubygems-2613-ruby23.patch  |   355 +
 .../patches/ruby-rubygems-2612-ruby24.patch        |   437 +
 .../patches/ruby-rubygems-2613-ruby24.patch        |   355 +
 .../wmfire-update-for-new-gdk-versions.patch       |     2 +-
 gnu/packages/patches/wxwidgets-fix-windowGTK.patch |    18 -
 gnu/packages/perl.scm                              |    14 +-
 gnu/packages/php.scm                               |    17 +-
 gnu/packages/python.scm                            |   306 +-
 gnu/packages/ruby.scm                              |     7 +-
 gnu/packages/screen.scm                            |     4 +-
 gnu/packages/search.scm                            |    10 +-
 gnu/packages/serialization.scm                     |     8 +-
 gnu/packages/shells.scm                            |     2 +-
 gnu/packages/shellutils.scm                        |    35 +
 gnu/packages/statistics.scm                        |   146 +-
 gnu/packages/tcl.scm                               |     6 +-
 gnu/packages/tex.scm                               |    20 +
 gnu/packages/textutils.scm                         |     2 +-
 gnu/packages/tls.scm                               |     4 +-
 gnu/packages/video.scm                             |    62 +-
 gnu/packages/virtualization.scm                    |    18 +-
 gnu/packages/w3m.scm                               |     2 +-
 gnu/packages/web-browsers.scm                      |     2 +-
 gnu/packages/web.scm                               |    76 +-
 gnu/packages/wine.scm                              |     4 +-
 gnu/packages/wxwidgets.scm                         |     6 +-
 gnu/packages/xdisorg.scm                           |    11 +-
 gnu/packages/xfce.scm                              |     2 +-
 gnu/packages/xml.scm                               |    31 +-
 gnu/packages/xorg.scm                              |    17 +-
 gnu/services/audio.scm                             |    35 +-
 gnu/services/base.scm                              |    13 +
 gnu/tests/base.scm                                 |    83 +
 guix/build/emacs-build-system.scm                  |    45 +-
 guix/scripts/archive.scm                           |     1 -
 guix/scripts/copy.scm                              |     1 -
 guix/scripts/environment.scm                       |     1 -
 guix/scripts/pack.scm                              |     1 -
 guix/scripts/package.scm                           |     3 +-
 guix/scripts/pull.scm                              |     1 -
 guix/scripts/system.scm                            |     1 -
 po/packages/fr.po                                  | 17387 +++++++++++++++++--
 130 files changed, 20481 insertions(+), 2725 deletions(-)
 delete mode 100644 gnu/packages/patches/gd-CVE-2017-7890.patch
 create mode 100644 gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch
 create mode 100644 
gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch
 create mode 100644 gnu/packages/patches/libxml2-CVE-2017-0663.patch
 create mode 100644 gnu/packages/patches/libxml2-CVE-2017-7375.patch
 create mode 100644 gnu/packages/patches/libxml2-CVE-2017-7376.patch
 create mode 100644 
gnu/packages/patches/libxml2-CVE-2017-9047+CVE-2017-9048.patch
 create mode 100644 
gnu/packages/patches/libxml2-CVE-2017-9049+CVE-2017-9050.patch
 create mode 100644 gnu/packages/patches/libzip-CVE-2017-12858.patch
 delete mode 100644 gnu/packages/patches/metabat-fix-boost-issue.patch
 delete mode 100644 gnu/packages/patches/metabat-remove-compilation-date.patch
 delete mode 100644 gnu/packages/patches/multiqc-fix-git-subprocess-error.patch
 create mode 100644 
gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-10664.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-10806.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-10911.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-11334.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-11434.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-12809.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-7493.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-8112.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-8309.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-8379.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-8380.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-9524.patch
 create mode 100644 gnu/packages/patches/ruby-2.2.7-rubygems-2613-ruby22.patch
 create mode 100644 gnu/packages/patches/ruby-2.3.4-rubygems-2613-ruby23.patch
 create mode 100644 gnu/packages/patches/ruby-rubygems-2612-ruby24.patch
 create mode 100644 gnu/packages/patches/ruby-rubygems-2613-ruby24.patch
 delete mode 100644 gnu/packages/patches/wxwidgets-fix-windowGTK.patch



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