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07/30: gnu: Add r-biovizbase.
From: |
Ricardo Wurmus |
Subject: |
07/30: gnu: Add r-biovizbase. |
Date: |
Tue, 7 Nov 2017 17:32:56 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 7af1f40373e1feb08c2d3901699dae02ca738e86
Author: Ricardo Wurmus <address@hidden>
Date: Tue Nov 7 15:33:50 2017 +0100
gnu: Add r-biovizbase.
* gnu/packages/bioinformatics.scm (r-biovizbase): New variable.
---
gnu/packages/bioinformatics.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b0738c6..11be5f9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9675,6 +9675,47 @@ annotation packages each of which has its own schema by
taking advantage of
the fact that each of these packages implements a select methods.")
(license license:artistic2.0)))
+(define-public r-biovizbase
+ (package
+ (name "r-biovizbase")
+ (version "1.26.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "biovizBase" version))
+ (sha256
+ (base32
+ "14l4vhj0a4ssr9m9zdzz3qpd4qw1mhgq5bmxq7jhrq3j9kmd6i2f"))))
+ (properties `((upstream-name . "biovizBase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-annotationfilter" ,r-annotationfilter)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-dichromat" ,r-dichromat)
+ ("r-ensembldb" ,r-ensembldb)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-hmisc" ,r-hmisc)
+ ("r-iranges" ,r-iranges)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-scales" ,r-scales)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/biovizBase")
+ (synopsis "Basic graphic utilities for visualization of genomic data")
+ (description
+ "The biovizBase package is designed to provide a set of utilities, color
+schemes and conventions for genomic data. It serves as the base for various
+high-level packages for biological data visualization. This saves development
+effort and encourages consistency.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")
- branch master updated (cd21587 -> 12a24ee), Ricardo Wurmus, 2017/11/07
- 02/30: gnu: Add r-complexheatmap., Ricardo Wurmus, 2017/11/07
- 04/30: gnu: Add r-annotationfilter., Ricardo Wurmus, 2017/11/07
- 01/30: gnu: Add r-genomicfiles., Ricardo Wurmus, 2017/11/07
- 03/30: gnu: Add r-dirichletmultinomial., Ricardo Wurmus, 2017/11/07
- 06/30: gnu: Add r-organismdbi., Ricardo Wurmus, 2017/11/07
- 05/30: gnu: Add r-ensembldb., Ricardo Wurmus, 2017/11/07
- 07/30: gnu: Add r-biovizbase.,
Ricardo Wurmus <=
- 10/30: gnu: Add r-gqtlbase., Ricardo Wurmus, 2017/11/07
- 11/30: gnu: Add r-snpstats., Ricardo Wurmus, 2017/11/07
- 08/30: gnu: Add r-ggbio., Ricardo Wurmus, 2017/11/07
- 09/30: gnu: Add r-gprofiler., Ricardo Wurmus, 2017/11/07
- 16/30: gnu: Add r-mice., Ricardo Wurmus, 2017/11/07
- 26/30: gnu: Add r-rsofia., Ricardo Wurmus, 2017/11/07
- 13/30: gnu: Add r-homo-sapiens., Ricardo Wurmus, 2017/11/07
- 15/30: gnu: Add r-ldblock., Ricardo Wurmus, 2017/11/07
- 12/30: gnu: Add r-org-hs-eg-db., Ricardo Wurmus, 2017/11/07
- 29/30: gnu: r-prabclus: Update description., Ricardo Wurmus, 2017/11/07