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10/30: gnu: Add r-gqtlbase.
From: |
Ricardo Wurmus |
Subject: |
10/30: gnu: Add r-gqtlbase. |
Date: |
Tue, 7 Nov 2017 17:32:56 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit e2b927993efc9254a941d035fb17f9ebaf330eac
Author: Ricardo Wurmus <address@hidden>
Date: Tue Nov 7 15:41:23 2017 +0100
gnu: Add r-gqtlbase.
* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
---
gnu/packages/bioinformatics.scm | 35 +++++++++++++++++++++++++++++++++++
1 file changed, 35 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f130d71..2200842 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9792,6 +9792,41 @@ gene identifier conversion and mapping homologous genes
across related
organisms via the @code{g:Profiler} toolkit.")
(license license:gpl2+)))
+(define-public r-gqtlbase
+ (package
+ (name "r-gqtlbase")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "gQTLBase" version))
+ (sha256
+ (base32
+ "1756vfcj2dkkgcmfkkg7qdaig36dv9gfvpypn9rbrky56wm1p035"))))
+ (properties `((upstream-name . "gQTLBase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-batchjobs" ,r-batchjobs)
+ ("r-bbmisc" ,r-bbmisc)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-bit" ,r-bit)
+ ("r-doparallel" ,r-doparallel)
+ ("r-ff" ,r-ff)
+ ("r-ffbase" ,r-ffbase)
+ ("r-foreach" ,r-foreach)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/gQTLBase")
+ (synopsis "Infrastructure for eQTL, mQTL and similar studies")
+ (description
+ "The purpose of this package is to simplify the storage and interrogation
+of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL,
+and more.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")
- branch master updated (cd21587 -> 12a24ee), Ricardo Wurmus, 2017/11/07
- 02/30: gnu: Add r-complexheatmap., Ricardo Wurmus, 2017/11/07
- 04/30: gnu: Add r-annotationfilter., Ricardo Wurmus, 2017/11/07
- 01/30: gnu: Add r-genomicfiles., Ricardo Wurmus, 2017/11/07
- 03/30: gnu: Add r-dirichletmultinomial., Ricardo Wurmus, 2017/11/07
- 06/30: gnu: Add r-organismdbi., Ricardo Wurmus, 2017/11/07
- 05/30: gnu: Add r-ensembldb., Ricardo Wurmus, 2017/11/07
- 07/30: gnu: Add r-biovizbase., Ricardo Wurmus, 2017/11/07
- 10/30: gnu: Add r-gqtlbase.,
Ricardo Wurmus <=
- 11/30: gnu: Add r-snpstats., Ricardo Wurmus, 2017/11/07
- 08/30: gnu: Add r-ggbio., Ricardo Wurmus, 2017/11/07
- 09/30: gnu: Add r-gprofiler., Ricardo Wurmus, 2017/11/07
- 16/30: gnu: Add r-mice., Ricardo Wurmus, 2017/11/07
- 26/30: gnu: Add r-rsofia., Ricardo Wurmus, 2017/11/07
- 13/30: gnu: Add r-homo-sapiens., Ricardo Wurmus, 2017/11/07
- 15/30: gnu: Add r-ldblock., Ricardo Wurmus, 2017/11/07
- 12/30: gnu: Add r-org-hs-eg-db., Ricardo Wurmus, 2017/11/07
- 29/30: gnu: r-prabclus: Update description., Ricardo Wurmus, 2017/11/07
- 18/30: gnu: Add r-gqtlstats., Ricardo Wurmus, 2017/11/07