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14/30: gnu: Add r-erma.
From: |
Ricardo Wurmus |
Subject: |
14/30: gnu: Add r-erma. |
Date: |
Tue, 7 Nov 2017 17:32:57 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 15f98b0d23cf39e713cf95a9cae5f0064c4eeada
Author: Ricardo Wurmus <address@hidden>
Date: Tue Nov 7 15:52:11 2017 +0100
gnu: Add r-erma.
* gnu/packages/bioinformatics.scm (r-erma): New variable.
---
gnu/packages/bioinformatics.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4f26e37..69100d7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9913,6 +9913,42 @@ on mapping using Entrez Gene identifiers.")
several related annotation packages.")
(license license:artistic2.0)))
+(define-public r-erma
+ (package
+ (name "r-erma")
+ (version "0.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "erma" version))
+ (sha256
+ (base32
+ "0gcfs9g8vvdv5vmq9b21kd8sq5mizjj49nfzd4in9zvp4b9v7x1g"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-foreach" ,r-foreach)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-homo-sapiens" ,r-homo-sapiens)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-shiny" ,r-shiny)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/erma")
+ (synopsis "Epigenomic road map adventures")
+ (description
+ "The epigenomics road map describes locations of epigenetic marks in DNA
+from a variety of cell types. Of interest are locations of histone
+modifications, sites of DNA methylation, and regions of accessible chromatin.
+This package presents a selection of elements of the road map including
+metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines
+by Ernst and Kellis.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")
- 26/30: gnu: Add r-rsofia., (continued)
- 26/30: gnu: Add r-rsofia., Ricardo Wurmus, 2017/11/07
- 13/30: gnu: Add r-homo-sapiens., Ricardo Wurmus, 2017/11/07
- 15/30: gnu: Add r-ldblock., Ricardo Wurmus, 2017/11/07
- 12/30: gnu: Add r-org-hs-eg-db., Ricardo Wurmus, 2017/11/07
- 29/30: gnu: r-prabclus: Update description., Ricardo Wurmus, 2017/11/07
- 18/30: gnu: Add r-gqtlstats., Ricardo Wurmus, 2017/11/07
- 19/30: gnu: Add r-gviz., Ricardo Wurmus, 2017/11/07
- 24/30: gnu: Add r-fithic., Ricardo Wurmus, 2017/11/07
- 25/30: gnu: Add r-hitc., Ricardo Wurmus, 2017/11/07
- 23/30: gnu: Add r-sushi., Ricardo Wurmus, 2017/11/07
- 14/30: gnu: Add r-erma.,
Ricardo Wurmus <=
- 17/30: gnu: Add r-hardyweinberg., Ricardo Wurmus, 2017/11/07
- 21/30: gnu: Add r-sm., Ricardo Wurmus, 2017/11/07
- 30/30: gnu: Add glusterfs., Ricardo Wurmus, 2017/11/07
- 27/30: gnu: Add r-bbmle., Ricardo Wurmus, 2017/11/07
- 28/30: gnu: r-fdrtool: Update description., Ricardo Wurmus, 2017/11/07
- 22/30: gnu: Add r-vioplot., Ricardo Wurmus, 2017/11/07
- 20/30: gnu: Add r-gwascat., Ricardo Wurmus, 2017/11/07