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15/30: gnu: Add r-ldblock.
From: |
Ricardo Wurmus |
Subject: |
15/30: gnu: Add r-ldblock. |
Date: |
Tue, 7 Nov 2017 17:32:57 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 66c39102e51a6d5915161d29fd8641129520ee35
Author: Ricardo Wurmus <address@hidden>
Date: Tue Nov 7 15:50:49 2017 +0100
gnu: Add r-ldblock.
* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 69100d7..af2cefa 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9949,6 +9949,37 @@ metadata and outputs of the ChromImpute procedure
applied to ENCODE cell lines
by Ernst and Kellis.")
(license license:artistic2.0)))
+(define-public r-ldblock
+ (package
+ (name "r-ldblock")
+ (version "1.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ldblock" version))
+ (sha256
+ (base32
+ "18nfsixh6d2wfrb9laqsgly5w1frzihhak683k0p8fdf51h4aqba"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-erma" ,r-erma)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-go-db" ,r-go-db)
+ ("r-homo-sapiens" ,r-homo-sapiens)
+ ("r-matrix" ,r-matrix)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-snpstats" ,r-snpstats)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/ldblock")
+ (synopsis "Data structures for linkage disequilibrium measures in
populations")
+ (description
+ "This package defines data structures for @dfn{linkage
+disequilibrium} (LD) measures in populations. Its purpose is to simplify
+handling of existing population-level data for the purpose of flexibly
+defining LD blocks.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")
- 06/30: gnu: Add r-organismdbi., (continued)
- 06/30: gnu: Add r-organismdbi., Ricardo Wurmus, 2017/11/07
- 05/30: gnu: Add r-ensembldb., Ricardo Wurmus, 2017/11/07
- 07/30: gnu: Add r-biovizbase., Ricardo Wurmus, 2017/11/07
- 10/30: gnu: Add r-gqtlbase., Ricardo Wurmus, 2017/11/07
- 11/30: gnu: Add r-snpstats., Ricardo Wurmus, 2017/11/07
- 08/30: gnu: Add r-ggbio., Ricardo Wurmus, 2017/11/07
- 09/30: gnu: Add r-gprofiler., Ricardo Wurmus, 2017/11/07
- 16/30: gnu: Add r-mice., Ricardo Wurmus, 2017/11/07
- 26/30: gnu: Add r-rsofia., Ricardo Wurmus, 2017/11/07
- 13/30: gnu: Add r-homo-sapiens., Ricardo Wurmus, 2017/11/07
- 15/30: gnu: Add r-ldblock.,
Ricardo Wurmus <=
- 12/30: gnu: Add r-org-hs-eg-db., Ricardo Wurmus, 2017/11/07
- 29/30: gnu: r-prabclus: Update description., Ricardo Wurmus, 2017/11/07
- 18/30: gnu: Add r-gqtlstats., Ricardo Wurmus, 2017/11/07
- 19/30: gnu: Add r-gviz., Ricardo Wurmus, 2017/11/07
- 24/30: gnu: Add r-fithic., Ricardo Wurmus, 2017/11/07
- 25/30: gnu: Add r-hitc., Ricardo Wurmus, 2017/11/07
- 23/30: gnu: Add r-sushi., Ricardo Wurmus, 2017/11/07
- 14/30: gnu: Add r-erma., Ricardo Wurmus, 2017/11/07
- 17/30: gnu: Add r-hardyweinberg., Ricardo Wurmus, 2017/11/07
- 21/30: gnu: Add r-sm., Ricardo Wurmus, 2017/11/07