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01/01: gnu: Add r-copynumber.
From: |
Roel Janssen |
Subject: |
01/01: gnu: Add r-copynumber. |
Date: |
Wed, 29 Nov 2017 06:46:58 -0500 (EST) |
roelj pushed a commit to branch master
in repository guix.
commit efa6a1ddb57d8a949484ba828effab4c59374f09
Author: Roel Janssen <address@hidden>
Date: Wed Nov 29 12:46:17 2017 +0100
gnu: Add r-copynumber.
* gnu/packages/bioinformatics.scm (r-copynumber): New variable.
---
gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 833376a..923100b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5909,6 +5909,29 @@ data types as well.")
microarrays.")
(license license:artistic2.0)))
+(define-public r-copynumber
+ (package
+ (name "r-copynumber")
+ (version "1.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "copynumber" version))
+ (sha256
+ (base32
+ "01kcwzl485yjrkgyg8117b1il957ss0v6rq4bbxf4ksd5fzcjmyx"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-s4vectors" ,r-s4vectors)
+ ("r-iranges" ,r-iranges)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-biocgenerics" ,r-biocgenerics)))
+ (home-page "https://bioconductor.org/packages/copynumber")
+ (synopsis "Segmentation of single- and multi-track copy number data")
+ (description
+ "This package segments single- and multi-track copy number data by a
+penalized least squares regression method.")
+ (license license:artistic2.0)))
+
(define-public r-geneplotter
(package
(name "r-geneplotter")