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01/01: gnu: jellyfish: Update to 2.2.7.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: jellyfish: Update to 2.2.7. |
Date: |
Thu, 30 Nov 2017 11:38:44 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 117d8cc40e9983098a080fe41cce7684b312351c
Author: Ricardo Wurmus <address@hidden>
Date: Mon Nov 27 16:21:54 2017 +0100
gnu: jellyfish: Update to 2.2.7.
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
---
gnu/packages/bioinformatics.scm | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 03054c9..5b3eec8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3292,7 +3292,7 @@ experiments and provide highly stable thresholds based on
reproducibility.")
(define-public jellyfish
(package
(name "jellyfish")
- (version "2.2.4")
+ (version "2.2.7")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/gmarcais/Jellyfish/"
@@ -3300,7 +3300,7 @@ experiments and provide highly stable thresholds based on
reproducibility.")
"/jellyfish-" version ".tar.gz"))
(sha256
(base32
- "0a6xnynqy2ibfbfz86b9g2m2dgm7f1469pmymkpam333gi3p26nk"))))
+ "1a1iwq9pq54k2m9ypvwl5s0bqfl64gwh9dx5af9i382ajas2016q"))))
(build-system gnu-build-system)
(outputs '("out" ;for library
"ruby" ;for Ruby bindings
@@ -3323,7 +3323,10 @@ experiments and provide highly stable thresholds based
on reproducibility.")
`(("bc" ,bc)
("time" ,time)
("ruby" ,ruby)
- ("python" ,python-2)))
+ ("python" ,python-2)
+ ("pkg-config" ,pkg-config)))
+ (inputs
+ `(("htslib" ,htslib)))
(synopsis "Tool for fast counting of k-mers in DNA")
(description
"Jellyfish is a tool for fast, memory-efficient counting of k-mers in