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01/07: gnu: Add libgff.
From: |
Ricardo Wurmus |
Subject: |
01/07: gnu: Add libgff. |
Date: |
Sun, 21 Jan 2018 08:19:29 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit c3b2ab9d3bcc0bd8562365b6720c7b135e877f55
Author: Ricardo Wurmus <address@hidden>
Date: Wed Jan 17 22:41:05 2018 +0100
gnu: Add libgff.
* gnu/packages/bioinformatics.scm (libgff): New variable.
---
gnu/packages/bioinformatics.scm | 25 ++++++++++++++++++++++++-
1 file changed, 24 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f0bfa93..f5e32ff 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2015, 2016, 2017 Ricardo Wurmus <address@hidden>
+;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ricardo Wurmus <address@hidden>
;;; Copyright © 2015, 2016, 2017 Ben Woodcroft <address@hidden>
;;; Copyright © 2015, 2016 Pjotr Prins <address@hidden>
;;; Copyright © 2015 Andreas Enge <address@hidden>
@@ -11109,3 +11109,26 @@ for alignment. Pseudoalignment of reads preserves the
key information needed
for quantification, and kallisto is therefore not only fast, but also as
accurate as existing quantification tools.")
(license license:bsd-2)))
+
+(define-public libgff
+ (package
+ (name "libgff")
+ (version "1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/Kingsford-Group/"
+ "libgff/archive/v" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0vc4nxyhlm6g9vvmx5l4lfs5pnvixsv1hiiy4kddf2y3p6jna8ls"))))
+ (build-system cmake-build-system)
+ (arguments `(#:tests? #f)) ; no tests included
+ (home-page "https://github.com/Kingsford-Group/libgff")
+ (synopsis "Parser library for reading/writing GFF files")
+ (description "This is a simple \"libraryfication\" of the GFF/GTF parsing
+code that is used in the Cufflinks codebase. The goal of this library is to
+provide this functionality without the necessity of drawing in a heavy-weight
+dependency like SeqAn.")
+ (license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt"))))
- branch master updated (b0b7150 -> 0b88f53), Ricardo Wurmus, 2018/01/21
- 07/07: gnu: emacs-tiny: Fix indentation., Ricardo Wurmus, 2018/01/21
- 05/07: gnu: Add r-catterplots., Ricardo Wurmus, 2018/01/21
- 02/07: gnu: Add libdivsufsort., Ricardo Wurmus, 2018/01/21
- 04/07: gnu: Add salmon., Ricardo Wurmus, 2018/01/21
- 01/07: gnu: Add libgff.,
Ricardo Wurmus <=
- 03/07: gnu: Add sailfish., Ricardo Wurmus, 2018/01/21
- 06/07: gnu: emacs-request: Update to 0.3.0., Ricardo Wurmus, 2018/01/21