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branch core-updates updated (a7fb298 -> 288b8fd)
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From: |
Mark H. Weaver |
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Subject: |
branch core-updates updated (a7fb298 -> 288b8fd) |
|
Date: |
Tue, 13 Feb 2018 13:20:21 -0500 (EST) |
mhw pushed a change to branch core-updates
in repository guix.
from a7fb298 Merge branch 'master' into core-updates
adds aba3e48 gnu: Add r-hdf5array.
adds 8226304 gnu: propeller-gcc: Fix build.
adds e720329 gnu: python-pycanberra: Use new URLs.
adds c275462 mailmap: Adjust entries for ng0.
adds 2ab5752 gnu: w3m: Update to 0.5.3+git20180125 [fixes
CVE-2018-{6196,6197,6198}].
adds f62dcba gnu: gmtp: Update to 1.3.11.
adds f1d7e14 gnu: libmd: Update to 1.0.0.
adds b4c9a31 gnu: libreoffice: Update to 5.4.5.1 [CVE-2018-6871].
adds 2310135 gnu: vifm: Update to 0.9.1.
adds 995b706 gnu: guile-emacs: Declare a source file-name.
adds b87047e gnu: emacs-d-mode: Declare a source file-name.
adds eb6b471 gnu: emacs-ob-ipython: Declare a source file-name.
adds ecae16b gnu: emacs-emms-player-mpv: Update to 0.0.13.
adds 4dba441 gnu: hdf5: Build with -fPIC.
adds d2c0f03 gnu: Add r-shinydashboard.
adds 748e9f1 gnu: Add r-rhdf5lib.
adds 9ec0898 gnu: Add r-beachmat.
adds 6fb1dc1 gnu: Add r-singlecellexperiment.
adds 658ab21 gnu: Add r-scater.
adds 7f1d9be gnu: Add r-scran.
adds 0093e26 gnu: Add kirigami.
adds 65bdcf3 nls: Update 'zh_CN' translation.
adds 95a396f gnu: go: Update to 1.9.4 [fixes CVE-2018-6574].
adds 4747cca gnu: ccache: Update to 3.4.
adds 171c764 gnu: mpv: Update to 0.28.1 [fixes CVE-2018-6360].
adds 8bbd4b0 gnu: Update copyright line.
adds ebcab70 gnu: fuse-exfat: Update to 1.2.8.
adds 6963305 gnu: local.mk: Remove mpv patch lines.
adds b90f72d gnu: ghc-streaming-commons: Fix license and description.
adds e2dc97d gnu: ghc: Use ghc-8 as default GHC.
adds afff0b6 gnu: ghc-old-locale: Allow building with newer base
package.
adds 49e5432 gnu: ghc-primitive: Update to 0.6.3.0.
adds 7291ad1 gnu: ghc-quickcheck: Update to 2.10.1.
adds d5e8617 gnu: Add ghc-quickcheck-latest.
adds c088e39 gnu: ghc-mtl: Fix build with GHC 8.
adds 40a6d7a gnu: ghc-dlist: Update to 0.8.0.4.
adds 4c8a1f4 gnu: ghc-vector: Update to 0.12.0.1.
adds 7fa02bc gnu: ghc-test-framework: Fix build with GHC 8.
adds 86ad4ee gnu: hspec-discover: Update to 2.2.4.
adds e5199a2 gnu: ghc-test-framework-quickcheck2: Update to 0.3.0.4.
adds 669692e gnu: ghc-tasty: Update to 0.11.0.4.
adds ed03ac4 gnu: ghc-hspec: Update to 2.2.4.
adds 245efb3 gnu: ghc-hspec-core: Update to 2.2.4.
adds b80a6f3 gnu: ghc-hunit: Update to 1.3.1.2.
adds 0f55dff gnu: ghc-hspec-meta: Update to 2.2.1.
adds d0f4853 gnu: Add ghc-integer-logarithms.
adds a5044b6 gnu: ghc-scientific: Update to 0.3.5.2.
adds 1b1a106 gnu: ghc-attoparsec: Update to 0.13.2.2.
adds 9dfc79b gnu: Add ghc-th-abstraction.
adds 82674ed gnu: Add ghc-hashable-time.
adds 037181e gnu: ghc-old-time: Allow building with GHC 8.
adds b1c5c8d gnu: ghc-uuid-types: Fix tests with latest QuickCheck.
adds 04a6999 gnu: ghc-quickcheck-instances: Update to 0.3.16.1.
adds c165ff9 gnu: ghc-hashable: Update to 1.2.6.1.
adds 5e3840e gnu: ghc-text: Update to 1.2.2.2.
adds 5e51bcf gnu: Add ghc-time-locale-compat.
adds 2485754 gnu: ghc-generic-deriving: Update to 1.11.1.
adds 29466a9 gnu: ghc-prelude-extras: Update to 0.4.0.3.
adds f9cb510 gnu: ghc-data-default: Update to 0.7.1.1.
adds f378ea1 gnu: ghc-data-default-class: Update to 0.1.2.0.
adds 64a6954 gnu: data-default-instances-base: Update to 0.1.0.1.
adds a559c26 gnu: ghc-haddock-api: Update to 2.17.3.
adds 354902e gnu: ghc-haddock-library: Update to 1.4.3.
adds 35182fa gnu: Add ghc-haddock-test.
adds 613845d gnu: ghc-haddock: Update to 2.17.4.
adds 567bf5b gnu: ghc-stm: Update to 2.4.5.0.
adds b9a64a3 gnu: Add ghc-haskell-lexer.
adds f30b753 gnu: Add ghc-pretty-show.
adds 6418074 gnu: ghc-cgi: Update to 3001.3.0.1.
adds e2d3e4d gnu: ghc-exceptions: Allow newer version of QuickCheck.
adds 2f430bf gnu: ghc-network: Update to 2.6.3.1.
adds 29addb2 gnu: ghc-network-uri: Update to 2.6.1.0.
adds 22b439d gnu: ghc-cgi: Update to 3001.3.0.2.
adds 4d9754c gnu: ghc-haskell-src-exts: Update to 1.18.2.
adds c74dacd gnu: hlint: Update to 1.9.37.
adds 7d4de98 gnu: ghc-extra: Update to 1.6.3.
adds 7fb6eb1 gnu: ghc-polyparse: Update to 1.12.
adds 2025964 gnu: ghc-zip-archive: Update to 0.3.0.5.
adds 3657bd1 gnu: Add ghc-haskell-src-exts-util.
adds b28f0ff gnu: Add ghc-refact.
adds 44c233a gnu: ghc-th-lift: Update to 0.7.8.
adds a6d1c4e gnu: Add ghc-th-lift-instances.
adds 0798fdd gnu: ghc-nats: Update to 1.1.1.
adds 9656e6e gnu: ghc-css-text: Update to 0.1.3.0.
adds 05c08ec gnu: ghc-fast-logger: Update to 2.4.11.
adds 4fe3ce8 gnu: ghc-utf8-string: Fix build with GHC 8.
adds bc819cd gnu: ghc-word8: Update to 0.1.3.
adds fe4f81b gnu: ghc-yaml: Update to 0.8.28.
adds e0ba59a gnu: Add ghc-pretty-show-for-haskell-src-exts.
adds f707b24 gnu: ghc-haskell-src-exts: Update to 1.20.1.
adds e135812 gnu: ghc-cheapskate: Update to 0.1.1.
adds 780185c gnu: hlint: Update to 2.1.
adds 1e85b2a gnu: ghc-shelly: Update to 1.7.0.1.
adds c7f321c gnu: ghc-directory: Update to 1.3.2.0.
adds 3295a6d gnu: ghc-cereal: Update to 0.5.3.0.
adds 99c4e56 gnu: ghc-unix-compat: Update to 0.4.2.0.
adds 5b4f617 gnu: ghc-time: Update to 0.3.7.
adds b85fbd9 gnu: ghc-transformers-compat: Update to 0.5.1.4.
adds 6d148d3 gnu: ghc-parallel: Update to 3.2.1.0.
adds e089470 gnu: Add ghc-string-qq.
adds 2e67886 gnu: ghc-lifted-base: Update to 0.2.3.8.
adds f212b62 gnu: ghc-doctest: Update to 0.11.0.
adds 3f229b1 gnu: ghc-adjunctions: Update to 4.3.
adds 4a1b560 gnu: ghc-profunctors: Update to 5.2.2.
adds b62bb81 gnu: ghc-resourcet: Update to 1.1.7.5.
adds 1d9d3ec gnu: ghc-objectname: Update to 1.1.0.1.
adds 4123cb7 gnu: ghc-sdl-mixer: Update to 0.6.2.0.
adds 6b76b70 gnu: ghc-zlib: Update to 0.6.1.1.
adds 3168796 gnu: Add cabal-doctest.
adds 41faaff gnu: Add ghc-doctest-0.12.
adds c2d30e3 gnu: ghc-distributive: Update to 0.5.3.
adds 5c1cf7f gnu: Add ghc-hxt-charproperties.
adds e85de10 gnu: Add ghc-hxt-unicode.
adds 6f8deed gnu: Add ghc-hxt-regex-xmlschema.
adds 3151189 gnu: Add ghc-hxt..
adds 4fa53bd gnu: ghc-sdl-image: Update to 0.6.1.2.
adds c701eba gnu: ghc-streaming-commons: Update to 0.1.16.
adds 4854c7b gnu: ghc-comonad: Update to 5.
adds c710d4e gnu: hscolour: Update to 1.24.1.
adds de428d4 gnu: ghc-temporary: Update to 1.2.0.4.
adds eff94e6 gnu: ghc-pcre-light: Update to 0.4.0.4.
adds fef57b7 gnu: ghc-parsers: Update to 0.12.4.
adds fc9dd55 gnu: ghc-case-insensitive: Update to 1.2.0.7.
adds 426f92b gnu: ghc-unordered-containers: Update to 0.2.7.1.
adds 86e9076 gnu: ghc-split: Update to 0.2.3.1.
adds e243990 gnu: ghc-parsec: Update to 3.1.11.
adds a25d303 gnu: ghc-vault: Update to 0.3.0.6.
adds a7c0b95 gnu: ghc-vector-binary-instances: Update to 0.2.4.
adds aebb8db gnu: ghc-mmorph: Update to 1.0.6.
adds 7044882 gnu: ghc-bifunctors: Update to 5.5.2.
adds 9d08707 gnu: ghc-pandoc-types: Update to 1.17.3.1.
adds 8b0346f gnu: ghc-texmath: Update to 0.10.1.1.
adds 307a0dc gnu: ghc-diff: Update to 0.3.4.
adds bffa466 gnu: ghc-binary: Update to 0.8.5.1.
adds 93303a3 gnu: ghc-tagged: Update to 0.8.5.
adds 92299af gnu: ghc-http: Update to 4000.3.3.
adds 95f92da gnu: ghc-wai-logger: Update to 2.3.0.
adds 915b12e gnu: ghc-wai-extra: Update to 3.0.18.
adds ecbb9b4 gnu: ghc-xss-sanitize: Update to 0.3.5.7.
adds 4815c59 gnu: ghc-mime-types: Update to 0.1.0.7.
adds 31b49f5 gnu: ghc-blaze-html: Update to 0.8.1.2.
adds e74e1ad gnu: ghc-aeson: Update to 1.2.4.0.
adds 4406f47 gnu: ghc-aeson-pretty: Update to 0.8.2.
adds b7032e1 gnu: ghc-cryptonite: Update to 0.20.
adds 9529896 gnu: ghc-x509: Update to 1.6.4.
adds ac12129 gnu: ghc-x509-store: Update to 1.6.2.
adds 1705140 gnu: ghc-x509-validation: Update to 1.6.5.
adds ea9aaa6 gnu: ghc-x509-system: Update to 1.6.4.
adds e80e97b gnu: ghc-openglraw: Update to 3.2.7.0.
adds 0ffea6f gnu: Add ghc-fixed.
adds 8951861 gnu: ghc-glut: Update to 2.7.0.10.
adds a36c03b gnu: ghc-gluraw: Update to 2.0.0.2.
adds aad2e83 gnu: ghc-opengl: Update to 3.0.1.0.
adds 5718432 gnu: ghc-fail: Disable haddock.
adds 080778a gnu: ghc-th-orphans: Update to 0.13.2.
adds db6dbe1 gnu: ghc-haskell-src-meta: Update to 0.8.0.2
adds d3c398c gnu: ghc-tagsoup: Update to 0.14.3.
adds 0ba9401 gnu: Add ghc-cmark-gfm.
adds 4012ea0 gnu: Add ghc-doctemplates.
adds ee44838 gnu: Add ghc-tasty-expected-failure.
adds e045c01 gnu: ghc-hslua: Update to 0.9.5.
adds 8045d84 gnu: Add ghc-hslua-module-text.
adds 14e9a39 gnu: Add ghc-skylighting.
adds 969d0c6 gnu: ghc-blaze-markup: Update to 0.8.2.0.
adds 64b5cce gnu: ghc-blaze-html: Update to 0.9.0.1.
adds 95796f8 gnu: ghc-aeson-pretty: Update to 0.8.5.
adds 88da6cd gnu: ghc-kan-extensions: Update to 5.0.1.
adds 77c1e8b gnu: ghc-statevar: Update to 1.1.0.4.
adds 95260eb gnu: ghc-lens: Update to 4.14.
adds 1e4a612 gnu: ghc-conduit-extra: Update to 1.1.13.3.
adds 29a2638 gnu: ghc-xml-conduit: Update to 1.7.1.2
adds a54b744 gnu: Add ghc-nanospec.
adds 32ddba7 gnu: Add ghc-call-stack.
adds 83d4361 gnu: Add ghc-doctest-0.13.
adds 38646a6 gnu: ghc-lens: Update to 4.15.4.
adds 416092e gnu: ghc-semigroupoids: Update to 5.1.
adds 165e5f6 gnu: ghc-th-expand-syns: Update to 0.4.0.0.
adds 9e21b4a gnu: ghc-th-reify-many: Update to 0.1.6.
adds 3869735 gnu: ghc-logging-facade: Update to 0.1.1.
adds 1e52170 gnu: ghc-mockery: Update to 0.3.3.
adds 3a4181d gnu: ghc-hourglass: Update to 0.2.10.
adds 15009c1 gnu: ghc-socks: Update to 0.5.5.
adds e41fad2 gnu: ghc-connection: Update to 0.2.6.
adds 7c86efe gnu: ghc-optparse-applicative: Update to 0.13.0.0.
adds 009d0f6 gnu: ghc-monad-control: Update to 1.0.1.0.
adds 1afa5ab gnu: ghc-pandoc: Update to 2.0.6.
adds 1ddcb5e gnu: ghc-hs-bibutils: Update to 6.2.0.1.
adds a49bb33 gnu: ghc-pandoc-citeproc: Update to 0.12.2.5.
adds c0a541c gnu: ghc-fgl: Fix build with newer QuickCheck.
adds 54afb52 gnu: ghc-fgl-arbitrary: Fix build with newer QuickCheck.
adds 973075a gnu: ghc-haskeline: Update to 0.7.4.2.
adds 64f597a gnu: ghc-process: Update to 1.6.3.0.
adds 831cb41 gnu: ghc-hslogger: Remove ghc-process from inputs.
adds da76c6d gnu: darcs: Remove ghc-process from inputs.
adds 1b58d28 gnu: ghc-system-filepath: Update to 0.4.14.
adds f25c95d gnu: ghc-tar: Disable tests.
adds 4b1f216 gnu: ghc-graphviz: Fix build with newer QuickCheck.
adds 97bfe0d gnu: darcs: Remove ghc-directory from inputs.
adds 0498d16 gnu: darcs: Update to 2.12.5.
adds 67e86e5 gnu: ghc-directory: Add note.
adds 2815963 gnu: ghc-reducers: Update to 3.12.2.
adds 183d1b1 gnu: ghc-trifecta: Update to 1.7.1.1.
adds f941a52 gnu: Add ghc-text-binary.
adds aeecabd gnu: Add ghc-parser-combinators.
adds ad5de22 gnu: Add ghc-megaparsec.
adds 77737e0 gnu: unzip: Mitigate CVE-2018-1000035.
adds f6d2b45 gnu: Add r-xfun.
adds 33d8699 gnu: r-rcpp: Update to 0.12.15.
adds fe5b889 gnu: r-shape: Update to 1.4.4.
adds c5f033e gnu: Add r-squarem.
adds f244296 gnu: Add r-utf8.
adds c555cca gnu: Add r-pillar.
adds 1c79192 gnu: Add r-uuid.
adds 6375842 gnu: r-pracma: Update to 2.1.4.
adds 1d13426 gnu: r-recipes: Update to 0.1.2.
adds cb471b7 gnu: r-ddalpha: Update to 1.3.1.1.
adds 64fe220 gnu: r-dendextend: Update to 1.7.0.
adds e30b878 gnu: r-hexbin: Update to 1.27.2.
adds de1c033 gnu: r-proxy: Update to 0.4-21.
adds 093acd0 gnu: r-sp: Update to 1.2-7.
adds 92e4534 gnu: r-lava: Update to 1.6.
adds 0f001b3 gnu: r-drr: Update to 0.0.3.
adds 2e9da33 gnu: r-vegan: Update to 2.4-6.
adds 66ae706 gnu: r-bookdown: Update to 0.6.
adds d22abe1 gnu: r-edger: Update to 3.20.8.
adds 5fb1fee gnu: r-variantannotation: Update to 1.24.5.
adds 0674657 gnu: r-limma: Update to 3.34.8.
adds 024f19c gnu: r-genomicranges: Update to 1.30.1.
adds 3734306 gnu: r-biomart: Update to 2.34.2.
adds c37b361 gnu: r-summarizedexperiment: Update to 1.8.1.
adds 99b3236 gnu: r-rtracklayer: Update to 1.38.3.
adds 0b18856 gnu: r-genomicfeatures: Update to 1.30.3.
adds e112944 gnu: r-genomation: Update to 1.11.3.
adds 0b24dc9 gnu: r-wgcna: Update to 1.62.
adds 5ef76bc gnu: r-gkmsvm: Update to 0.79.0.
adds b1f2753 gnu: r-methylkit: Update to 1.4.1.
adds 53f0dea gnu: r-msnbase: Update to 2.4.2.
adds 26e3e28 gnu: r-seurat: Update to 2.2.0.
adds f5f9442 gnu: r-keggrest: Update to 1.18.1.
adds 34d077b gnu: r-gage: Update to 2.28.2.
adds 1699423 gnu: r-ensembldb: Update to 2.2.1.
adds 97bf740 gnu: r-gprofiler: Update to 0.6.3.
adds 4c9264c gnu: r-mass: Update to 7.3-48.
adds 6aa4be9 gnu: r-mgcv: Update to 1.8-23.
adds ff1197c gnu: r-rpart: Update to 4.1-12.
adds 71d2f03 gnu: r-digest: Update to 0.6.15.
adds d222070 gnu: r-estimability: Update to 1.3.
adds ab3330e gnu: r-knitr: Update to 1.19.
adds c36ac74 gnu: r-microbenchmark: Update to 1.4-4.
adds 7387d35 gnu: r-rlang: Update to 0.1.6.
adds 59b62f1 gnu: r-tibble: Update to 1.4.2.
adds 172b63e gnu: r-dbplyr: Update to 1.2.0.
adds 2afbaab gnu: r-chron: Update to 2.3-52.
adds 78e03a7 gnu: r-xml2: Update to 1.2.0.
adds 9fb6e62 gnu: r-openssl: Update to 1.0.
adds ecba783 gnu: r-git2r: Update to 0.21.0.
adds 80f7210 gnu: r-withr: Update to 2.1.1.
adds edab1c0 gnu: r-hms: Update to 0.4.1.
adds 1324f85 gnu: r-rprojroot: Update to 1.3-2.
adds a63117c gnu: r-dt: Update to 0.4.
adds 8ff6853 gnu: r-irlba: Update to 2.3.2.
adds a566b3f gnu: r-synchronicity: Update to 1.3.2.
adds 48237fd gnu: r-bigmemory: Update to 4.5.33.
adds 2cd6bb5 gnu: r-r-cache: Update to 0.13.0.
adds f7d7dd4 gnu: r-r-rsp: Update to 0.42.0.
adds e04b71a gnu: r-mvtnorm: Update to 1.0-7.
adds a46c719 gnu: r-matrixstats: Update to 0.53.1.
adds 9604af8 gnu: r-viridis: Update to 0.5.0.
adds be8db0a gnu: r-viridislite: Update to 0.3.0.
adds c4f148a gnu: r-tidyr: Update to 0.8.0.
adds b216fdf gnu: r-hmisc: Update to 4.1-1.
adds fe394ea gnu: r-zoo: Update to 1.8-1.
adds 23fb604 gnu: r-pcapp: Update to 1.9-73.
adds 09da3d4 gnu: r-fpc: Update to 2.1-11.
adds f66a34f gnu: r-vgam: Update to 1.0-5.
adds c71cd58 gnu: r-pbapply: Update to 1.3-4.
adds 725673a gnu: r-rcppeigen: Update to 0.3.3.4.0.
adds 45ec408 gnu: r-quantreg: Update to 5.35.
adds f9ee174 gnu: r-lme4: Update to 1.1-15.
adds 4ff5fc6 gnu: r-ranger: Update to 0.9.0.
adds 1ee1448 gnu: r-lubridate: Update to 1.7.2.
adds 7d358f3 gnu: r-htmlwidgets: Update to 1.0.
adds 117c83b gnu: r-htmltable: Update to 1.11.2.
adds 47b731b gnu: address@hidden: Update to 4.9.81.
adds 146be91 gnu: address@hidden: Update to 4.14.19.
adds acff6aa gnu: linux-libre: Update to 4.15.3.
new 288b8fd Merge branch 'master' into core-updates
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.mailmap | 23 +-
gnu/local.mk | 3 -
gnu/packages/bioinformatics.scm | 311 +++-
gnu/packages/ccache.scm | 10 +-
gnu/packages/check.scm | 17 +
gnu/packages/compression.scm | 17 +-
gnu/packages/cran.scm | 143 +-
gnu/packages/crypto.scm | 14 +-
gnu/packages/emacs.scm | 9 +-
gnu/packages/embedded.scm | 5 +-
gnu/packages/golang.scm | 4 +-
gnu/packages/haskell-check.scm | 145 +-
gnu/packages/haskell-crypto.scm | 22 +-
gnu/packages/haskell-web.scm | 93 +-
gnu/packages/haskell.scm | 1388 +++++++++++++-----
gnu/packages/kde-frameworks.scm | 51 +
gnu/packages/libcanberra.scm | 6 +-
gnu/packages/libreoffice.scm | 70 +-
gnu/packages/libusb.scm | 4 +-
gnu/packages/linux.scm | 18 +-
gnu/packages/maths.scm | 10 +-
gnu/packages/patches/mpv-CVE-2018-6360-1.patch | 138 --
gnu/packages/patches/mpv-CVE-2018-6360-2.patch | 59 -
gnu/packages/patches/mpv-CVE-2018-6360-3.patch | 84 --
gnu/packages/statistics.scm | 194 +--
gnu/packages/version-control.scm | 12 +-
gnu/packages/video.scm | 9 +-
gnu/packages/vim.scm | 4 +-
gnu/packages/w3m.scm | 6 +-
gnu/packages/web.scm | 57 +-
gnu/packages/xml.scm | 123 +-
po/guix/zh_CN.po | 1860 +++++++++++++++++-------
32 files changed, 3415 insertions(+), 1494 deletions(-)
delete mode 100644 gnu/packages/patches/mpv-CVE-2018-6360-1.patch
delete mode 100644 gnu/packages/patches/mpv-CVE-2018-6360-2.patch
delete mode 100644 gnu/packages/patches/mpv-CVE-2018-6360-3.patch
- branch core-updates updated (a7fb298 -> 288b8fd),
Mark H. Weaver <=