02/02: gnu: Add pigx.

[Ricardo Wurmus]

rekado pushed a commit to branch master
in repository guix.

commit c1c9cc664b600b1de7557e44a67471ef1556f793
Author: Ricardo Wurmus <address@hidden>
Date:   Fri Mar 16 15:40:01 2018 +0100

    gnu: Add pigx.
    
    * gnu/packages/bioinformatics.scm (pigx): New variable.
---
 gnu/packages/bioinformatics.scm | 36 ++++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fa4a495..7875479 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12941,6 +12941,42 @@ and interactive quality reports.  The pipeline is 
designed to work with UMI
 based methods.")
     (license license:gpl3+)))
 
+(define-public pigx
+  (package
+    (name "pigx")
+    (version "0.0.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/BIMSBbioinfo/pigx/";
+                                  "releases/download/v" version
+                                  "/pigx-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1nxb2hbp40yg3j7n56k4dhsd2fl1j8g0wpiiln56prqzljwnlgmf"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("python" ,python)
+       ("pigx-bsseq" ,pigx-bsseq)
+       ("pigx-chipseq" ,pigx-chipseq)
+       ("pigx-rnaseq" ,pigx-rnaseq)
+       ("pigx-scrnaseq" ,pigx-scrnaseq)))
+    (home-page "http://bioinformatics.mdc-berlin.de/pigx/";)
+    (synopsis "Analysis pipelines for genomics")
+    (description "PiGx is a collection of genomics pipelines.  It includes the
+following pipelines:
+
address@hidden
address@hidden PiGx BSseq for raw fastq read data of bisulfite experiments
address@hidden PiGx RNAseq for RNAseq samples
address@hidden PiGx scRNAseq for single cell dropseq analysis
address@hidden PiGx ChIPseq for reads from ChIPseq experiments
address@hidden itemize
+
+All pipelines are easily configured with a simple sample sheet and a
+descriptive settings file.  The result is a set of comprehensive, interactive
+HTML reports with interesting findings about your samples.")
+    (license license:gpl3+)))
+
 (define-public r-diversitree
   (package
     (name "r-diversitree")