[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
02/05: gnu: petsc-openmpi: Configure with support for hdf5 data format.
From: |
Ludovic Courtès |
Subject: |
02/05: gnu: petsc-openmpi: Configure with support for hdf5 data format. |
Date: |
Tue, 4 Sep 2018 11:55:11 -0400 (EDT) |
civodul pushed a commit to branch master
in repository guix.
commit 71ca16b58d20aa26157acc4c345c0af80ec8df5d
Author: Paul Garlick <address@hidden>
Date: Mon Sep 3 11:57:38 2018 +0100
gnu: petsc-openmpi: Configure with support for hdf5 data format.
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add
hdf5-parallel-openmpi.
[arguments]: Add '--with-hdf5-include' and '--with-hdf5-lib'
flags. Add 'set-test-environment' phase.
Signed-off-by: Ludovic Courtès <address@hidden>
---
gnu/packages/maths.scm | 19 +++++++++++++++++--
1 file changed, 17 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 50c0a32..42136f6 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -15,7 +15,7 @@
;;; Copyright © 2016, 2017, 2018 Ludovic Courtès <address@hidden>
;;; Copyright © 2016 Leo Famulari <address@hidden>
;;; Copyright © 2016, 2017 Thomas Danckaert <address@hidden>
-;;; Copyright © 2017 Paul Garlick <address@hidden>
+;;; Copyright © 2017, 2018 Paul Garlick <address@hidden>
;;; Copyright © 2017 Nils Gillmann <address@hidden>
;;; Copyright © 2017 Ben Woodcroft <address@hidden>
;;; Copyright © 2017 Theodoros Foradis <address@hidden>
@@ -1685,6 +1685,7 @@ scientific applications modeled by partial differential
equations.")
(name "petsc-openmpi")
(inputs
`(("openmpi" ,openmpi)
+ ("hdf5" ,hdf5-parallel-openmpi)
,@(package-inputs petsc)))
(arguments
(substitute-keyword-arguments (package-arguments petsc)
@@ -1692,7 +1693,21 @@ scientific applications modeled by partial differential
equations.")
``("--with-mpiexec=mpirun"
,(string-append "--with-mpi-dir="
(assoc-ref %build-inputs "openmpi"))
- ,@(delete "--with-mpi=0" ,cf)))))
+ ,(string-append "--with-hdf5-include="
+ (assoc-ref %build-inputs "hdf5") "/include")
+ ,(string-append "--with-hdf5-lib="
+ (assoc-ref %build-inputs "hdf5") "/lib/libhdf5.a")
+ ,@(delete "--with-mpi=0" ,cf)))
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (add-before 'check 'set-test-environment
+ (lambda _
+ ;; By default, running the test suite would fail because 'ssh'
+ ;; could not be found in $PATH. Define this variable to
+ ;; placate Open MPI without adding a dependency on OpenSSH (the
+ ;; agent isn't used anyway.)
+ (setenv "OMPI_MCA_plm_rsh_agent" (which "cat"))
+ #t))))))
(synopsis "Library to solve PDEs (with MPI support)")))
(define-public petsc-complex-openmpi