[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
02/03: gnu: Add r-cssam.
From: |
Ricardo Wurmus |
Subject: |
02/03: gnu: Add r-cssam. |
Date: |
Mon, 24 Sep 2018 07:31:36 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 28829c040f92399c0705f968f232543e97e5f5f9
Author: Ricardo Wurmus <address@hidden>
Date: Mon Sep 24 13:23:44 2018 +0200
gnu: Add r-cssam.
* gnu/packages/bioinformatics.scm (r-cssam): New variable.
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d92fbd7..2366843 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13793,3 +13793,34 @@ sequencing data.")
common tasks in the analysis of omics data, leveraging and enhancing features
provided by Bioconductor packages.")
(license license:gpl3+))))
+
+(define-public r-cssam
+ (let ((revision "1")
+ (commit "9ec58c982fa551af0d80b1a266890d92954833f2"))
+ (package
+ (name "r-cssam")
+ (version (git-version "1.4" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/shenorrLab/csSAM.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "128syf9v39gk0z3ip000qpsjbg6l1siyq6c8b0hz41dzg5achyb3"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-formula" ,r-formula)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-pkgmaker" ,r-pkgmaker)
+ ("r-plyr" ,r-plyr)
+ ("r-rngtools" ,r-rngtools)
+ ("r-scales" ,r-scales)))
+ (home-page "https://github.com/shenorrLab/csSAM/")
+ (synopsis "Cell type-specific statistical analysis of microarray")
+ (description "This package implements the method csSAM that computes
+cell-specific differential expression from measured cell proportions using
+SAM.")
+ ;; Any version
+ (license license:lgpl2.1+))))