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07/08: gnu: Add r-sctransform.
From: |
guix-commits |
Subject: |
07/08: gnu: Add r-sctransform. |
Date: |
Fri, 19 Apr 2019 09:39:24 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 9b86fea05f223a3215e19cccc75d3504f707a1c2
Author: Ricardo Wurmus <address@hidden>
Date: Fri Apr 19 15:38:25 2019 +0200
gnu: Add r-sctransform.
* gnu/packages/cran.scm (r-sctransform): New variable.
---
gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8816b20..5ea36cf 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13888,3 +13888,35 @@ regular expressions. Regular expressions are a very
powerful feature, however
they are often difficult to interpret. Rex allows you to build complex
regular expressions from human readable expressions")
(license license:expat)))
+
+(define-public r-sctransform
+ (package
+ (name "r-sctransform")
+ (version "0.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "sctransform" version))
+ (sha256
+ (base32
+ "1r5kiqqs318q59h2i8m7c6nhghp9w6q26ss2y5a390lkhsawgx6p"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-future" ,r-future)
+ ("r-future-apply" ,r-future-apply)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gridextra" ,r-gridextra)
+ ("r-mass" ,r-mass)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)
+ ("r-reshape2" ,r-reshape2)))
+ (home-page "https://github.com/ChristophH/sctransform")
+ (synopsis "Variance stabilizing transformations for Single Cell UMI Data")
+ (description
+ "This package provides a normalization method for single-cell UMI count
+data using a variance stabilizing transformation. The transformation is based
+on a negative binomial regression model with regularized parameters. As part
+of the same regression framework, this package also provides functions for
+batch correction, and data correction.")
+ (license license:gpl3)))
- branch master updated (f00067d -> 296da6e), guix-commits, 2019/04/19
- 01/08: gnu: r-caret: Update to 6.0-83., guix-commits, 2019/04/19
- 04/08: gnu: r-sdmtools: Update to 1.1-221.1., guix-commits, 2019/04/19
- 05/08: gnu: r-rdpack: Update to 0.11-0., guix-commits, 2019/04/19
- 08/08: gnu: r-seurat: Update to 3.0.0., guix-commits, 2019/04/19
- 02/08: gnu: r-clipr: Update to 0.6.0., guix-commits, 2019/04/19
- 03/08: gnu: r-hardyweinberg: Update to 1.6.2., guix-commits, 2019/04/19
- 06/08: gnu: r-urltools: Update to 1.7.3., guix-commits, 2019/04/19
- 07/08: gnu: Add r-sctransform.,
guix-commits <=