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[PATCH] gnu: Add Biopython.
From: |
Ricardo Wurmus |
Subject: |
[PATCH] gnu: Add Biopython. |
Date: |
Wed, 15 Apr 2015 17:47:32 +0200 |
>From ca3474b1a639e43d708aad4385057cd84e3cce8b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <address@hidden>
Date: Wed, 15 Apr 2015 17:46:35 +0200
Subject: [PATCH] gnu: Add Biopython.
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New
variables.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0239e97..6d53e4e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -187,6 +187,35 @@ pybedtools extends BEDTools by offering feature-level
manipulations from with
Python.")
(license license:gpl2+)))
+(define-public python-biopython
+ (package
+ (name "python-biopython")
+ (version "1.65")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://biopython.org/DIST/biopython-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "13m8s9jkrw40zvdp1rl709n6lmgdh4f52aann7gzr6sfp0fwhg26"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("python-setuptools" ,python2-setuptools)))
+ (home-page "http://biopython.org/")
+ (synopsis "Set of tools for biological computation in Python")
+ (description
+ "Biopython is a set of tools for biological computation written in Python
+by an international team of developers.")
+ (license license:expat)))
+
+(define-public python2-biopython
+ (package (inherit (package-with-python2 python-biopython))
+ (inputs
+ `(("python2-numpy" ,python2-numpy)))))
+
(define-public bowtie
(package
(name "bowtie")
--
2.1.0
- [PATCH] gnu: Add Biopython.,
Ricardo Wurmus <=
- Re: [PATCH] gnu: Add Biopython., Ludovic Courtès, 2015/04/16
- Re: [PATCH] gnu: Add Biopython., Ricardo Wurmus, 2015/04/16
- Re: [PATCH] gnu: Add Biopython., Andreas Enge, 2015/04/16
- Re: [PATCH] gnu: Add Biopython., Ludovic Courtès, 2015/04/16
- Re: [PATCH] gnu: Add Biopython., Ricardo Wurmus, 2015/04/16
- Re: [PATCH] gnu: Add Biopython., Ricardo Wurmus, 2015/04/18
- Re: [PATCH] gnu: Add Biopython., Andreas Enge, 2015/04/18
- Re: [PATCH] gnu: Add Biopython., John Darrington, 2015/04/16
- Re: [PATCH] gnu: Add Biopython., Ludovic Courtès, 2015/04/16
- Re: [PATCH] gnu: Add Biopython., Andreas Enge, 2015/04/16