[PATCH 00/14] Add deal.II and some dependencies.

[ericbavier]

From: Eric Bavier <address@hidden>

The following patches add the deal.II finite element library and some of its
dependencies.  Also included are some non-trivial package upgrades.

I've tested builds on both x86_64 and i686, but cannot comment on mips or arm.

Stylistic or other comments are most welcome.

Eric Bavier (14):
  gnu: hwloc: Upgrade to 1.10.1.
  gnu: hwloc: Move numactl to inputs.
  gnu: openmpi: Upgrade to 1.8.5.
  gnu: Update scotch to 6.0.4.
  gnu: scotch, pt-scotch: Use modify-phases.
  gnu: scotch, pt-scotch: Build esmumps libraries.
  gnu: Add ScaLAPACK.
  gnu: Add p4est.
  gnu: Add METIS.
  gnu: Add MUMPS.
  gnu: petsc: Upgrade to 3.6.0.
  gnu: Add arpack-ng-openmpi.
  gnu: Add SLEPc.
  gnu: Add deal.II.

 gnu-system.am                                      |   5 +-
 gnu/packages/maths.scm                             | 589 ++++++++++++++++++---
 gnu/packages/mpi.scm                               |  54 +-
 gnu/packages/patches/deal.II-p4est-interface.patch |  62 +++
 .../patches/hwloc-gather-topology-lstopo.patch     |  13 +
 gnu/packages/patches/mumps-build-parallelism.patch |  13 +
 gnu/packages/patches/petsc-fix-threadcomm.patch    |  15 -
 .../patches/pt-scotch-build-parallelism.patch      |  13 +
 gnu/packages/patches/scotch-test-threading.patch   | 131 +----
 9 files changed, 670 insertions(+), 225 deletions(-)
 create mode 100644 gnu/packages/patches/deal.II-p4est-interface.patch
 create mode 100644 gnu/packages/patches/hwloc-gather-topology-lstopo.patch
 create mode 100644 gnu/packages/patches/mumps-build-parallelism.patch
 delete mode 100644 gnu/packages/patches/petsc-fix-threadcomm.patch
 create mode 100644 gnu/packages/patches/pt-scotch-build-parallelism.patch

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2.2.1