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Re: [PATCH] gnu: Add ruby-bio-locus.
From: |
Thompson, David |
Subject: |
Re: [PATCH] gnu: Add ruby-bio-locus. |
Date: |
Mon, 14 Sep 2015 10:01:40 -0400 |
On Mon, Sep 14, 2015 at 9:24 AM, Pjotr Prins <address@hidden> wrote:
> * gnu/packages/ruby.scm (ruby-bio-locus): New variable.
Awesome! Just a couple of minor comments below.
> ---
> gnu/packages/ruby.scm | 20 ++++++++++++++++++++
> 1 file changed, 20 insertions(+)
>
> diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
> index ee0acc8..0a0fc1a 100644
> --- a/gnu/packages/ruby.scm
> +++ b/gnu/packages/ruby.scm
> @@ -1124,3 +1124,23 @@ it unifies the API for web servers, web frameworks,
> and software in between
> into a single method call.")
> (home-page "http://rack.github.io/")
> (license license:expat)))
> +
> +(define-public ruby-bio-locus
> + (package
> + (name "ruby-bio-locus")
This is an application, not a library, correct? If so, I think it
would be best to name it just "bio-locus" and put it in the (gnu
packages bioinformatics) module. WDYT?
> + (version "0.0.7")
> + (source
> + (origin
> + (method url-fetch)
> + (uri (rubygems-uri "bio-locus" version))
> + (sha256
> + (base32
> + "02vmrxyimkj9sahsp4zhfhnmbvz6dbbqz1y01vglf8cbwvkajfl0"))))
> + (build-system ruby-build-system)
> + (native-inputs
> + `(("ruby-rspec" ,ruby-rspec)))
> + (synopsis "Tool for fast querying of genome locations")
> + (description "This tabix-like tool essentially allows your to
> +store this chr+pos or chr+pos+alt information in a fast database.")
How about something more descriptive? Here's a modified snippet from
your README:
Bio-locus is a tool for fast querying of genome locations.
Many file formats in bioinformatics contain records that start with a
chromosome name and a position for a SNP, or a start-end position
for indels.
Bio-locus allows users to store this chr+pos or chr+pos+alt information in a
fast database.
> + (home-page "https://github.com/pjotrp/bio-locus")
> + (license license:expat)))
> --
> 2.4.3
>
Thanks! Keep 'em coming!
- Dave