Re: [PATCH] Add cufflinks.

[Ludovic Courtès]

Ricardo Wurmus <address@hidden> skribis:

> From e8186326701df11ee4bdb22d4717cf4b8c27dd50 Mon Sep 17 00:00:00 2001
> From: Ricardo Wurmus <address@hidden>
> Date: Wed, 16 Sep 2015 17:42:41 +0200
> Subject: [PATCH] gnu: Add cufflinks.
>
> * gnu/packages/bioinformatics.scm (boost-1.55, cufflinks): New
>   variables.

[...]

> +(define boost-1.55
> +  (package (inherit boost)

I would keep it next to ‘boost’.


[...]

> +          (lambda* (#:key inputs #:allow-other-keys)
> +            ;; The includes for "eigen" are located in a subdirectory.
> +            (setenv "CPATH" (string-append (assoc-ref inputs "eigen")
> +                                           "/include/eigen3/" ":"
> +                                           (or (getenv "CPATH") "")))

It should be using ‘pkg-config eigen3 --cflags’, but pkg-config is
missing.

Could you check if adding pkg-config makes this hack unnecessary?

Otherwise LGTM.

Thanks,
Ludo’.