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Re: [PATCH] gnu: Add bio-blastxmlparser.
From: |
Pjotr Prins |
Subject: |
Re: [PATCH] gnu: Add bio-blastxmlparser. |
Date: |
Thu, 17 Sep 2015 08:46:38 +0200 |
User-agent: |
Mutt/1.5.21 (2010-09-15) |
This one is in the queue.
On Wed, Sep 16, 2015 at 08:53:13AM +0200, Pjotr Prins wrote:
> * gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
> ---
> gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
> 1 file changed, 25 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 1f34211..b9e1158 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -2642,3 +2642,28 @@ position for indels. Bio-locus allows users to store
> this chr+pos or
> chr+pos+alt information in a database.")
> (home-page "https://github.com/pjotrp/bio-locus")
> (license license:expat)))
> +
> +(define-public bio-blastxmlparser
> + (package
> + (name "bio-blastxmlparser")
> + (version "2.0.4")
> + (source
> + (origin
> + (method url-fetch)
> + (uri (rubygems-uri "bio-blastxmlparser" version))
> + (sha256
> + (base32
> + "1wf4qygcmdjgcqm6flmvsagfr1gs9lf63mj32qv3z1f481zc5692"))))
> + (build-system ruby-build-system)
> + (propagated-inputs
> + `(("ruby-bio-logger" ,ruby-bio-logger)
> + ("ruby-nokogiri" ,ruby-nokogiri)))
> + (inputs
> + `(("ruby-rspec" ,ruby-rspec)))
> + (synopsis "Fast big data BLAST XML parser and library")
> + (description "Very fast parallel big-data BLAST XML file parser
> +which can be used as command line utility. Use blastxmlparser to:
> +Parse BLAST XML; filter output; generate FASTA, JSON, YAML, RDF,
> +JSON-LD, HTML, csv, tabular output etc.")
> + (home-page "http://github.com/pjotrp/blastxmlparser")
> + (license license:expat)))
> --
> 2.4.3
>
>
--