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[PATCH] Add pyicoteo.
From: |
Ricardo Wurmus |
Subject: |
[PATCH] Add pyicoteo. |
Date: |
Fri, 11 Mar 2016 17:01:43 +0100 |
>From f92a3c18613945df3e5fcf6009f8f329da06ebb9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <address@hidden>
Date: Fri, 11 Mar 2016 17:01:00 +0100
Subject: [PATCH] gnu: Add pyicoteo.
* gnu/packages/bioinformatics.scm (pyicoteo): New variable.
---
gnu/packages/bioinformatics.scm | 38 ++++++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2f0d2db..2566a36 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2622,6 +2622,44 @@ the phenotype as it models the data.")
generated using the PacBio Iso-Seq protocol.")
(license license:bsd-3))))
+(define-public pyicoteo
+ (package
+ (name "pyicoteo")
+ (version "2.0.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://bitbucket.org/regulatorygenomicsupf/"
+ "pyicoteo/get/v" version ".tar.bz2"))
+ (file-name (string-append name "-" version ".tar.bz2"))
+ (sha256
+ (base32
+ "0d6087f29xp8wxwlj111c3sylli98n0l8ry58c51ixzq0zfm50wa"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2 ; does not work with Python 3
+ #:tests? #f)) ; there are no tests
+ (inputs
+ `(("python2-matplotlib" ,python2-matplotlib)))
+ (home-page "https://bitbucket.org/regulatorygenomicsupf/pyicoteo")
+ (synopsis "Analyze high-throughput genetic sequencing data")
+ (description
+ "Pyicoteo is a suite of tools for the analysis of high-throughput genetic
+sequencing data. It works with genomic coordinates. There are currently six
+different command-line tools:
+
address@hidden
address@hidden pyicoregion: for generating exploratory regions automatically;
address@hidden pyicoenrich: for differential enrichment between two conditions;
address@hidden pyicoclip: for calling CLIP-Seq peaks without a control;
address@hidden pyicos: for genomic coordinates manipulation;
address@hidden pyicoller: for peak calling on punctuated ChIP-Seq;
address@hidden pyicount: to count how many reads from N experiment files
overlap in a
+ region file;
address@hidden pyicotrocol: to combine operations from pyicoteo.
address@hidden enumerate\n")
+ (license license:gpl3+)))
+
(define-public prodigal
(package
(name "prodigal")
--
2.1.0
- [PATCH] Add pyicoteo.,
Ricardo Wurmus <=