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[PATCH] Add r-motifrg.
From: |
Ricardo Wurmus |
Subject: |
[PATCH] Add r-motifrg. |
Date: |
Wed, 6 Apr 2016 17:33:24 +0200 |
>From 82d9056a23f72d87aa8baa90398695aefea55879 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <address@hidden>
Date: Fri, 18 Mar 2016 12:16:17 +0100
Subject: [PATCH] gnu: Add r-motifrg.
* gnu/packages/bioinformatics.scm (r-motifrg): New variable.
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7692361..23d427e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4827,6 +4827,33 @@ Stephens (1990).")
by UCSC (hg19, February 2009) and stored in Biostrings objects.")
(license license:artistic2.0)))
+(define-public r-motifrg
+ (package
+ (name "r-motifrg")
+ (version "1.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "motifRG" version))
+ (sha256
+ (base32
+ "1v9zm5629k2lcqbbgw8bwflvbircyxkfavbkvmbd212kgwcng8vn"))))
+ (properties `((upstream-name . "motifRG")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-bsgenome.hsapiens.ucsc.hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
+ ("r-iranges" ,r-iranges)
+ ("r-seqlogo" ,r-seqlogo)
+ ("r-xvector" ,r-xvector)))
+ (home-page "http://bioconductor.org/packages/motifRG")
+ (synopsis "Discover motifs in high throughput sequencing data")
+ (description
+ "This package provides tools for discriminative motif discovery in high
+throughput genetic sequencing data sets using regression methods.")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")
--
2.1.0
- [PATCH] Add r-motifrg.,
Ricardo Wurmus <=