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Re: [PATCH] Add vcflib.
From: |
Ricardo Wurmus |
Subject: |
Re: [PATCH] Add vcflib. |
Date: |
Wed, 20 Apr 2016 15:08:44 +0200 |
Roel Janssen <address@hidden> writes:
> From 3ed14719121a952fca48a8ad3426588ebb58a130 Mon Sep 17 00:00:00 2001
> From: Roel Janssen <address@hidden>
> Date: Tue, 22 Mar 2016 15:57:33 +0100
> Subject: [PATCH 7/8] gnu: Add intervaltree.
> * gnu/packages/bioinformatics.scm (intervaltree): New variable.
> ---
> gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
> 1 file changed, 32 insertions(+)
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 9cbde46..5a0eb16 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -4985,3 +4985,35 @@ automatically handles index file generation and use.")
> ;; this program is a submodule, is licensed MIT, which is the same as
> ;; the Expat license.
> (license (list license:gpl2 license:expat)))))
> +
> +(define-public intervaltree
> + (let ((commit "dbb4c513d1ad3baac516fc1484c995daf9b42838"))
> + (package
> + (name "intervaltree")
> + (version (string-append "0-1." (string-take commit 7)))
> + (source (origin
> + (method url-fetch)
> + (uri (string-append
> + "https://github.com/ekg/intervaltree/archive/" commit
> ".tar.gz"))
> + (file-name (string-append name "-" version ".tar.gz"))
> + (sha256
> + (base32 "19prwpn2wxsrijp5svfqvfcxl5nj7zdhm3jycd5kqhl9nifpmcks"))))
> + (build-system gnu-build-system)
> + (arguments
> + `(#:phases
> + (modify-phases %standard-phases
> + (delete 'configure) ; There is no configure phase.
> + (replace 'check
> + (lambda _
> + (zero? (system* "./interval_tree_test"))))
The indentation looks wrong here. Could you please double-check that
you’re not using tabs?
> + (replace 'install
> + (lambda* (#:key outputs #:allow-other-keys)
> + (let ((include (string-append (assoc-ref outputs "out")
> + "/include/intervaltree")))
> + (install-file "IntervalTree.h" include)))))))
> + (home-page "https://github.com/ekg/intervaltree/")
> + (synopsis "Minimal C++ interval tree implementation")
> + (description "This library provides a basic implementation of an
> interval
> +tree using C++ templates, allowing the insertion of arbitrary types into the
> +tree.")
> + (license license:expat))))
The rest looks good to me.
~~ Ricardo
- Re: [PATCH] Add vcflib., (continued)
Re: [PATCH] Add vcflib., Ricardo Wurmus, 2016/04/20
Re: [PATCH] Add vcflib., Ricardo Wurmus, 2016/04/20
Re: [PATCH] Add vcflib., Ricardo Wurmus, 2016/04/20
Re: [PATCH] Add vcflib.,
Ricardo Wurmus <=
Re: [PATCH] Add vcflib., Ricardo Wurmus, 2016/04/20