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Re: [PATCH] gnu: Add r-genomationdata.
From: |
Efraim Flashner |
Subject: |
Re: [PATCH] gnu: Add r-genomationdata. |
Date: |
Mon, 23 May 2016 21:09:56 +0300 |
User-agent: |
Mutt/1.6.1 (2016-04-27) |
On Mon, May 23, 2016 at 04:57:16PM +0200, Ricardo Wurmus wrote:
> * gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
> ---
> gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
> 1 file changed, 26 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index fbaae12..51c371c 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -5002,6 +5002,32 @@ genomic feature data as long as it has minimal
> information on the locations of
> genomic intervals. In addition, it can use BAM or BigWig files as input.")
> (license license:artistic2.0)))
>
> +(define-public r-genomationdata
> + (package
> + (name "r-genomationdata")
> + (version "1.4.0")
> + (source (origin
> + (method url-fetch)
> + ;; We cannot use bioconductor-uri here because this tarball is
> + ;; located under "data/annotation/" instead of "bioc/".
> + (uri (string-append "https://bioconductor.org/packages/"
> + "release/data/experiment/src/contrib/"
> + "genomationData_" version ".tar.gz"))
> + (sha256
> + (base32
> + "1xzq2j722d8lcn5bc3aq3yb34xwis2d0bpsf6jsq4xw1bg0bsy79"))))
> + (build-system r-build-system)
> + (arguments `(#:substitutable? #f))
^^^^
why not?
> + (native-inputs
> + `(("r-knitr" ,r-knitr)))
> + (home-page "http://bioinformatics.mdc-berlin.de/genomation/")
> + (synopsis "Experimental data for use with the genomation package")
> + (description
> + "This package contains experimental genetic data for use with the
> +genomation package. Included are Chip Seq, Methylation and Cage data,
> +downloaded from Encode.")
> + (license license:gpl3+)))
> +
> (define-public r-org-hs-eg-db
> (package
> (name "r-org-hs-eg-db")
> --
> 2.7.3
>
Looks good
--
Efraim Flashner <address@hidden> אפרים פלשנר
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