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[PATCH 17/22] gnu: Add bpp-popgen.
From: |
Ben Woodcroft |
Subject: |
[PATCH 17/22] gnu: Add bpp-popgen. |
Date: |
Wed, 27 Jul 2016 22:54:18 +1000 |
* gnu/packages/bioinformatics.scm (bpp-popgen): New variable.
---
gnu/packages/bioinformatics.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 803dae9..5dfc637 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -540,6 +540,39 @@ analysis, phylogenetics, molecular evolution and
population genetics. This
library provides phylogenetics-related modules.")
(license license:cecill-c))))
+(define-public bpp-popgen
+ ;; The last release was in 2014 and the recommended way to install from
source
+ ;; is to clone the git repository, so we do this.
+ ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
+ (let ((commit "e472bac9b1a148803895d747cd6d0c5904f85d9f"))
+ (package
+ (name "bpp-popgen")
+ (version (string-append "2.2.0-1." (string-take commit 7)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "http://biopp.univ-montp2.fr/git/bpp-popgen")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "0yn82dzn1n5629nzja68xfrhi655709rjanyryb36vzkmymy6dw5"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:parallel-build? #f
+ #:tests? #f)) ; There are no tests.
+ (inputs
+ `(("bpp-core" ,bpp-core)
+ ("bpp-seq" ,bpp-seq)
+ ("gcc" ,gcc-5)))
+ (home-page "http://biopp.univ-montp2.fr")
+ (synopsis "Bio++ population genetics library")
+ (description
+ "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
+analysis, phylogenetics, molecular evolution and population genetics. This
+library provides population genetics-related modules.")
+ (license license:cecill-c))))
+
(define-public bpp-seq
;; The last release was in 2014 and the recommended way to install from
source
;; is to clone the git repository, so we do this.
--
2.9.1
- [PATCH 07/22] gnu: Add perl-file-slurper., (continued)
- [PATCH 07/22] gnu: Add perl-file-slurper., Ben Woodcroft, 2016/07/27
- [PATCH 09/22] gnu: Add perl-file-grep., Ben Woodcroft, 2016/07/27
- [PATCH 10/22] gnu: Add perl-array-utils., Ben Woodcroft, 2016/07/27
- [PATCH 11/22] gnu: Add perl-test-files., Ben Woodcroft, 2016/07/27
- [PATCH 12/22] gnu: Add perl-env-path., Ben Woodcroft, 2016/07/27
- [PATCH 13/22] gnu: Add mcl., Ben Woodcroft, 2016/07/27
- [PATCH 14/22] gnu: Add bpp-core., Ben Woodcroft, 2016/07/27
- [PATCH 15/22] gnu: Add bpp-seq., Ben Woodcroft, 2016/07/27
- [PATCH 16/22] gnu: Add bpp-phyl., Ben Woodcroft, 2016/07/27
- [PATCH 17/22] gnu: Add bpp-popgen.,
Ben Woodcroft <=
- [PATCH 18/22] gnu: Add bppsuite., Ben Woodcroft, 2016/07/27
- [PATCH 19/22] gnu: Add exonerate., Ben Woodcroft, 2016/07/27
- [PATCH 20/22] gnu: Add prank., Ben Woodcroft, 2016/07/27
- [PATCH 21/22] gnu: Add raxml., Ben Woodcroft, 2016/07/27
- [PATCH 22/22] gnu: Add roary., Ben Woodcroft, 2016/07/27
- Re: [PATCH 01/22] gnu: parallel: Use full paths for executables., Leo Famulari, 2016/07/28
- Re: PATCH [0/22]: Add roary., Ludovic Courtès, 2016/07/31