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[PATCH 2/2] gnu: Add r-bamsignals.
From: |
Ricardo Wurmus |
Subject: |
[PATCH 2/2] gnu: Add r-bamsignals. |
Date: |
Thu, 18 Aug 2016 13:09:42 +0200 |
* gnu/packages/bioinformatics.scm (r-bamsignals): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ade6e37..2bd71c8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6350,6 +6350,36 @@ nucleotide sequence analysis. The package is primarily
useful to developers
of other R packages who wish to make use of HTSlib.")
(license license:lgpl2.0+)))
+(define-public r-bamsignals
+ (package
+ (name "r-bamsignals")
+ (version "1.4.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bamsignals" version))
+ (sha256
+ (base32
+ "1xqiqvg52p6fcvhr4146djbz79r3j1kmh75mq7rndwglmiybpwmy"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rhtslib" ,r-rhtslib)
+ ("r-zlibbioc" ,r-zlibbioc)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "http://bioconductor.org/packages/bamsignals")
+ (synopsis "Extract read count signals from bam files")
+ (description
+ "This package allows to efficiently obtain count vectors from indexed bam
+files. It counts the number of nucleotide sequence reads in given genomic
+ranges and it computes reads profiles and coverage profiles. It also handles
+paired-end data.")
+ (license license:gpl2+)))
+
(define-public emboss
(package
(name "emboss")
--
2.9.0